Literature DB >> 25437545

Heterochromatin-mediated gene silencing facilitates the diversification of olfactory neurons.

David B Lyons1, Angeliki Magklara2, Tracie Goh3, Srihari C Sampath4, Anne Schaefer4, Gunnar Schotta5, Stavros Lomvardas6.   

Abstract

An astounding property of the nervous system is its cellular diversity. This diversity, which was initially realized by morphological and electrophysiological differences, is ultimately produced by variations in gene-expression programs. In most cases, these variations are determined by external cues. However, a growing number of neuronal types have been identified in which inductive signals cannot explain the few but decisive transcriptional differences that cause cell diversification. Here, we show that heterochromatic silencing, which we find is governed by histone methyltransferases G9a (KMT1C) and GLP (KMT1D), is essential for stochastic and singular olfactory receptor (OR) expression. Deletion of G9a and GLP dramatically reduces the complexity of the OR transcriptome, resulting in transcriptional domination by a few ORs and loss of singularity in OR expression. Thus, our data suggest that, in addition to its previously known functions, heterochromatin creates an epigenetic platform that affords stochastic, mutually exclusive gene choices and promotes cellular diversity.

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Year:  2014        PMID: 25437545      PMCID: PMC4251488          DOI: 10.1016/j.celrep.2014.10.001

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  34 in total

Review 1.  The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity.

Authors:  Masatoshi Nei; Yoshihito Niimura; Masafumi Nozawa
Journal:  Nat Rev Genet       Date:  2008-12       Impact factor: 53.242

2.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

Review 3.  H3K9 methyltransferase G9a and the related molecule GLP.

Authors:  Yoichi Shinkai; Makoto Tachibana
Journal:  Genes Dev       Date:  2011-04-15       Impact factor: 11.361

4.  High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation.

Authors:  E Josephine Clowney; Angeliki Magklara; Bradley M Colquitt; Nidhi Pathak; Robert P Lane; Stavros Lomvardas
Journal:  Genome Res       Date:  2011-06-24       Impact factor: 9.043

Review 5.  The retinal mosaics of opsin expression in invertebrates and vertebrates.

Authors:  Jens Rister; Claude Desplan
Journal:  Dev Neurobiol       Date:  2011-12       Impact factor: 3.964

6.  An epigenetic signature for monoallelic olfactory receptor expression.

Authors:  Angeliki Magklara; Angela Yen; Bradley M Colquitt; E Josephine Clowney; William Allen; Eirene Markenscoff-Papadimitriou; Zoe A Evans; Pouya Kheradpour; George Mountoufaris; Catriona Carey; Gilad Barnea; Manolis Kellis; Stavros Lomvardas
Journal:  Cell       Date:  2011-04-28       Impact factor: 41.582

7.  Control of cognition and adaptive behavior by the GLP/G9a epigenetic suppressor complex.

Authors:  Anne Schaefer; Srihari C Sampath; Adam Intrator; Alice Min; Tracy S Gertler; D James Surmeier; Alexander Tarakhovsky; Paul Greengard
Journal:  Neuron       Date:  2009-12-10       Impact factor: 17.173

8.  Hox repertoires for motor neuron diversity and connectivity gated by a single accessory factor, FoxP1.

Authors:  Jeremy S Dasen; Alessandro De Camilli; Bin Wang; Philip W Tucker; Thomas M Jessell
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

9.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

10.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

Authors:  Cole Trapnell; Brian A Williams; Geo Pertea; Ali Mortazavi; Gordon Kwan; Marijke J van Baren; Steven L Salzberg; Barbara J Wold; Lior Pachter
Journal:  Nat Biotechnol       Date:  2010-05-02       Impact factor: 54.908

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  27 in total

Review 1.  Chemosensory receptor specificity and regulation.

Authors:  Ryan P Dalton; Stavros Lomvardas
Journal:  Annu Rev Neurosci       Date:  2015-04-22       Impact factor: 12.449

2.  Spatial Determination of Neuronal Diversification in the Olfactory Epithelium.

Authors:  Julie H Coleman; Brian Lin; Jonathan D Louie; Jesse Peterson; Robert P Lane; James E Schwob
Journal:  J Neurosci       Date:  2018-12-10       Impact factor: 6.167

3.  A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium.

Authors:  Longzhi Tan; Xiaoliang Sunney Xie
Journal:  Chem Senses       Date:  2018-07-05       Impact factor: 3.160

4.  Achieving diverse and monoallelic olfactory receptor selection through dual-objective optimization design.

Authors:  Xiao-Jun Tian; Hang Zhang; Jens Sannerud; Jianhua Xing
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

Review 5.  Heterochromatin and the molecular mechanisms of 'parent-of-origin' effects in animals.

Authors:  Prim B Singh
Journal:  J Biosci       Date:  2016-12       Impact factor: 1.826

Review 6.  Molecular basis and biological function of variability in spatial genome organization.

Authors:  Elizabeth H Finn; Tom Misteli
Journal:  Science       Date:  2019-09-06       Impact factor: 47.728

Review 7.  Transcriptional and Epigenetic Control of Mammalian Olfactory Epithelium Development.

Authors:  Godwin Sokpor; Eman Abbas; Joachim Rosenbusch; Jochen F Staiger; Tran Tuoc
Journal:  Mol Neurobiol       Date:  2018-03-12       Impact factor: 5.590

Review 8.  Monoallelic expression of olfactory receptors.

Authors:  Kevin Monahan; Stavros Lomvardas
Journal:  Annu Rev Cell Dev Biol       Date:  2015-09-10       Impact factor: 13.827

9.  Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome.

Authors:  Giovanni Iacono; Aline Dubos; Hamid Méziane; Marco Benevento; Ehsan Habibi; Amit Mandoli; Fabrice Riet; Mohammed Selloum; Robert Feil; Huiqing Zhou; Tjitske Kleefstra; Nael Nadif Kasri; Hans van Bokhoven; Yann Herault; Hendrik G Stunnenberg
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

10.  Odorant Receptor Gene Choice.

Authors:  Timothy S McClintock
Journal:  ChemoSense       Date:  2015-03
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