Literature DB >> 25430077

Inside single cells: quantitative analysis with advanced optics and nanomaterials.

Yi Cui1, Joseph Irudayaraj.   

Abstract

Single-cell explorations offer a unique window to inspect molecules and events relevant to mechanisms and heterogeneity constituting the central dogma of biology. A large number of nucleic acids, proteins, metabolites, and small molecules are involved in determining and fine-tuning the state and function of a single cell at a given time point. Advanced optical platforms and nanotools provide tremendous opportunities to probe intracellular components with single-molecule accuracy, as well as promising tools to adjust single-cell activity. To obtain quantitative information (e.g., molecular quantity, kinetics, and stoichiometry) within an intact cell, achieving the observation with comparable spatiotemporal resolution is a challenge. For single-cell studies, both the method of detection and the biocompatibility are critical factors as they determine the feasibility, especially when considering live-cell analysis. Although a considerable proportion of single-cell methodologies depend on specialized expertise and expensive instruments, it is our expectation that the information content and implication will outweigh the costs given the impact on life science enabled by single-cell analysis.
© 2014 Wiley Periodicals, Inc.

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Year:  2014        PMID: 25430077      PMCID: PMC4397143          DOI: 10.1002/wnan.1321

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol        ISSN: 1939-0041


  136 in total

1.  Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking.

Authors:  Maxime Dahan; Sabine Lévi; Camilla Luccardini; Philippe Rostaing; Béatrice Riveau; Antoine Triller
Journal:  Science       Date:  2003-10-17       Impact factor: 47.728

2.  From whole-body sections down to cellular level, multiscale imaging of phospholipids by MALDI mass spectrometry.

Authors:  Pierre Chaurand; Dale S Cornett; Peggi M Angel; Richard M Caprioli
Journal:  Mol Cell Proteomics       Date:  2010-08-23       Impact factor: 5.911

Review 3.  Single-cell monitoring using fiberoptic nanosensors.

Authors:  Tuan Vo-Dinh; Yan Zhang
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2011 Jan-Feb

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  Adenosine A(2A) receptors assemble into higher-order oligomers at the plasma membrane.

Authors:  Pierre-Alexandre Vidi; Jiji Chen; Joseph M K Irudayaraj; Val J Watts
Journal:  FEBS Lett       Date:  2008-11-12       Impact factor: 4.124

6.  In situ intracellular spectroscopy with surface enhanced Raman spectroscopy (SERS)-enabled nanopipettes.

Authors:  Elina A Vitol; Zulfiya Orynbayeva; Michael J Bouchard; Jane Azizkhan-Clifford; Gary Friedman; Yury Gogotsi
Journal:  ACS Nano       Date:  2009-11-24       Impact factor: 15.881

Review 7.  FRET and FCS--friends or foes?

Authors:  Harekrushna Sahoo; Petra Schwille
Journal:  Chemphyschem       Date:  2011-02-09       Impact factor: 3.102

8.  In situ live cell sensing of multiple nucleotides exploiting DNA/RNA aptamers and graphene oxide nanosheets.

Authors:  Ying Wang; Zhaohui Li; Thomas J Weber; Dehong Hu; Chiann-Tso Lin; Jinghong Li; Yuehe Lin
Journal:  Anal Chem       Date:  2013-06-24       Impact factor: 6.986

9.  Single-cell systems biology by super-resolution imaging and combinatorial labeling.

Authors:  Eric Lubeck; Long Cai
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

10.  Dynamics of Dnmt1 interaction with the replication machinery and its role in postreplicative maintenance of DNA methylation.

Authors:  Lothar Schermelleh; Andrea Haemmer; Fabio Spada; Nicole Rösing; Daniela Meilinger; Ulrich Rothbauer; M Cristina Cardoso; Heinrich Leonhardt
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

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  9 in total

Review 1.  Toward precision medicine of breast cancer.

Authors:  Nicolas Carels; Lizânia Borges Spinassé; Tatiana Martins Tilli; Jack Adam Tuszynski
Journal:  Theor Biol Med Model       Date:  2016-02-29       Impact factor: 2.432

2.  Dissecting the behavior and function of MBD3 in DNA methylation homeostasis by single-molecule spectroscopy and microscopy.

Authors:  Yi Cui; Joseph Irudayaraj
Journal:  Nucleic Acids Res       Date:  2015-03-09       Impact factor: 16.971

3.  Epigenetic Toxicity of Trichloroethylene: A Single-Molecule Perspective.

Authors:  Yi Cui; Samrat Roy Choudhury; Joseph Irudayaraj
Journal:  Toxicol Res (Camb)       Date:  2016-01-27       Impact factor: 3.524

4.  Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation.

Authors:  Yi Cui; Xiaolei Wang; Wen Ren; Jing Liu; Joseph Irudayaraj
Journal:  ACS Nano       Date:  2016-02-24       Impact factor: 15.881

5.  Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Authors:  Yi Cui; Dehong Hu; Lye Meng Markillie; William B Chrisler; Matthew J Gaffrey; Charles Ansong; Lori Sussel; Galya Orr
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

6.  Single-Cell Quantification of Cytosine Modifications by Hyperspectral Dark-Field Imaging.

Authors:  Xiaolei Wang; Yi Cui; Joseph Irudayaraj
Journal:  ACS Nano       Date:  2015-11-02       Impact factor: 15.881

7.  Opto-thermophoretic fiber tweezers.

Authors:  Abhay Kotnala; Yuebing Zheng
Journal:  Nanophotonics       Date:  2019-02-12       Impact factor: 8.449

8.  Multi-color single-molecule tracking and subtrajectory analysis for quantification of spatiotemporal dynamics and kinetics upon T cell activation.

Authors:  Yuma Ito; Kumiko Sakata-Sogawa; Makio Tokunaga
Journal:  Sci Rep       Date:  2017-08-01       Impact factor: 4.379

9.  Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer.

Authors:  Miho Oka; Liu Xu; Toshihiro Suzuki; Toshiaki Yoshikawa; Hiromi Sakamoto; Hayato Uemura; Akiyasu C Yoshizawa; Yutaka Suzuki; Tetsuya Nakatsura; Yasushi Ishihama; Ayako Suzuki; Masahide Seki
Journal:  Genome Biol       Date:  2021-01-04       Impact factor: 13.583

  9 in total

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