| Literature DB >> 25425243 |
Ilaria Ferrarotti1,2, Tomás P Carroll3, Stefania Ottaviani4, Anna M Fra5, Geraldine O'Brien6, Kevin Molloy7, Luciano Corda8, Daniela Medicina9, David R Curran10, Noel G McElvaney11, Maurizio Luisetti12,13.
Abstract
BACKGROUND: Alpha-1 antitrypsin (AAT) is the most abundant circulating antiprotease and is a member of the serine protease inhibitor (SERPIN) superfamily. The gene encoding AAT is the highly polymorphic SERPINA1 gene, found at 14q32.1. Mutations in the SERPINA1 gene can lead to AAT deficiency (AATD) which is associated with a substantially increased risk of lung and liver disease. The most common pathogenic AAT variant is Z (Glu342Lys) which causes AAT to misfold and polymerise within hepatocytes and other AAT-producing cells. A group of rare mutations causing AATD, termed Null or Q0, are characterised by a complete absence of AAT in the plasma. While ultra rare, these mutations confer a particularly high risk of emphysema.Entities:
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Year: 2014 PMID: 25425243 PMCID: PMC4255440 DOI: 10.1186/s13023-014-0172-y
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Description of the eight new Null mutations identified
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| T180ACA,delCA > Ter190TAA |
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| V239GTG, delG > Ter241TGA |
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| E257GAG > TerTAG |
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| Y297TAT > TerTAA |
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| Q305CAA > TerTAA |
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| L327CTG,delT > Ter338TGA |
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| V337GTG,delG > Ter338TGA |
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| F370TTT,delT > Ter373TAA |
Figure 1Genomic sequence chromatograms representing Null mutations.
Summary of clinical details of Q0 individuals
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| M1/Q0cork | 0.70 | 43 | proband | cough, dyspnoea | 15 |
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| M3/Q0perugia | 0.83 | 60 | proband | emphysema | 52 |
| 2.1 - IB | M3/Q0perugia | 0.80 | 54 | brother | healthy | 22 |
| 3.1 – IA | M1/Q0brescia | 0.70 | 73 | mother | chronic bronchitis | 0 |
| 3.1 – IB | M1/Q0brescia | 0.71 | 71 | father | healthy | 0 |
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| Q0brescia/Q0brescia | Undetectable | 41 | proband | emphysema | 3 |
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| Q0brescia/Q0brescia | Undetectable | 37 | proband | emphysema | 6 |
| 3.1 – IIIA | M1/Q0brescia | 0.70 | 7 | daughter | healthy | 0 |
| 3.1 – IIIB | M1/Q0brescia | 1.08 | 10 | daughter | healthy | 0 |
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| Z/Q0brescia | 0.20 | 41 | proband | emphysema | 20 |
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| S/Q0torino | 0.71 | 53 | proband | emphysema | 15 |
| 5.1 – IA | M2/Q0cosenza | 0.80 | 63 | aunt | dyspnoea | 0 |
| 5.1 – IB | M2/Q0cosenza | 0.85 | 67 | mother | asthma | 0 |
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| S/Q0cosenza | 0.60 | 34 | proband | healthy | 4 |
| 5.1 – IIB | S/Q0cosenza | 0.71 | 43 | sister | healthy | 0 |
| 6.1 – IA | M2/Q0pordenone | 0.55 | 37 | father | healthy | 0 |
| 6.1 – IIA | M3/Q0pordenone | 0.81 | 6 | brother | healthy | 0 |
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| M1/Q0pordenone | 0.77 | 0.5 | proband | cough | 0 |
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| M1/Q0pordenone | 0.91 | 54 | proband | emphysema | ex |
| 6.2 – IIA | M1/Q0pordenone | 0.78 | 34 | nephew | healthy | 0 |
| 6.2 – IIB | M1/Q0pordenone | 0.66 | 24 | nephew | healthy | 0 |
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| M1/Q0pordenone | 0.47 | 69 | proband | emphysema | unknown |
| 6.3 – IIA | M1/Q0pordenone | 0.81 | 37 | son | healthy | 0.1 |
| 6.4 – IA | M3/Q0pordenone | 1.30 | 38 | mother | healthy (pregnant) | 0 |
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| M2/Q0pordenone | 0.78 | 6 | proband | healthy | 0 |
| 7.1 – IA | M1/Q0lampedusa | 0.62 | 87 | mother | emphysema | 0 |
| 7.1 – IIA | M1/Q0lampedusa | 0.76 | 57 | sister | healthy | 0 |
| 7.1 – IIB | M1/Q0lampedusa | 0.80 | 61 | sister | healthy | 0 |
| 7.1 – IIC | M1/Q0lampedusa | 0.73 | 55 | sister | healthy | 15 |
| 7.1 – IID | M1/Q0lampedusa | 0.74 | 51 | sister | chronic bronchitis | 60 |
| 7.1 – IIE | M1/Q0lampedusa | 0.71 | 48 | sister | chronic bronchitis | 0 |
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| Q0lampedusa/Q0lampedusa | <0.1 | 46 | proband | emphysema, asthma | 0 |
| 7.1 – IIIA | M1/Q0lampedusa | 1.00 | 30 | niece | healthy | 0 |
| 7.1 – IIIB | M2/Q0lampedusa | 0.84 | 39 | nephew | healthy | 10 |
| 7.1 – IIIC | M1/Q0lampedusa | 0.64 | 33 | nephew | healthy | 24 |
| 7.1– IIID | M1/Q0lampedusa | 0.74 | 22 | nephew | healthy | 1.5 |
| 7.1 – IIIE | M1/Q0lampedusa | 0.67 | 15 | nephew | healthy | 0 |
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| M1/Q0dublin | 0.74 | 70 | proband | bronchiectasis | 1 |
| 8.1 – IIA | M1/Q0dublin | 0.64 | 40 | son | healthy | 0 |
| 8.1 – IIB | M1/Q0dublin | 0.70 | 34 | son | recurrent LRTIs | 1 |
| 8.1 – IIC | M1/Q0dublin | 1.11 | 39 | daughter | healthy | 0 |
Index cases are written in bold.
List of the 24 Null mutation described to date
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| Large deletion | Q0isola di procida | Intron IC | g8801,del17.65 kb | [ |
| Q0riedenburg | Exon IC | Complete deletion of the gene | [ | |
| Intron mutations | Q0savannah | Intron IA | g.5307_5308ins8bp | [ |
| Q0porto | Intron IC | +1G > A | [ | |
| Q0madrid | Intron IC | +3, insT | [ | |
| Q0west | Intron II | +1G > T | [ | |
| Q0bonny blue | Intron II | +1delG | [ | |
| Nonsense mutations | Q0kowloon | Exon II | Y 38TAC > Ter TAA | [ |
| Q0chillichote | Exon II | Q 156CAG > Ter TAG | [ | |
| Q0amersfoort or Q0predevoort rs199422210 | Exon II | Y 160TAC > Ter TAG | [ | |
| Q0trastevere | Exon III | W194 TGG > Ter TGA | [ | |
| Q0bellingham rs199422211 | Exon III | K 217AAG > Ter TAG | [ | |
| Q0cairo rs1802963 | Exon III | K 259AAA > Ter TAA | [ | |
| Frameshift mutations | Q0milano | Exon III | K59,del17bp > Ter AAA | [ |
| Q0soest | Exon II | T102ACC,del A > Ter 112 TGA | [ | |
| Q0granite falls rs267606950 | Exon II | YTAC, delC > Ter 160 TAG | [ | |
| Q0hong kong | Exon IV | L318CTC, del TC > Ter 334 TAA | [ | |
| Q0mattawa rs28929473 | Exon V | L353 TTA, ins T > Ter 376 TGA | [ | |
| Q0ourem | Exon V | L 352TTA, ins T > Ter 376 TGA | [ | |
| Q0bolton | Exon V | P362CCC, delC > Ter 373 TAA | [ | |
| Q0clayton | Exon V | P 362CCC,ins C > Ter 376 TGA, and M1(Val) | [ | |
| Q0saarbruecken | Exon V | P362CCC,ins C > Ter 376 TGA, and M1(Ala) | [ | |
| Missense mutations | Q0lisbon | Exon II | T68ACC > I ATC | [ |
| Q0ludwigshafen rs28931572 | Exon II | I92ATC > N AAC | [ | |
| Q0newport | Exon II | G115GGC > S AGC | [ | |
| Q0new hope | Exon IV | G320GGG > E GAG and E342GAG > L AAG | [ |
For intronic mutations, reference sequence was NG_008290; dbSNP identification was reported where present.