| Literature DB >> 28243076 |
Ignacio Blanco1, Patricia Bueno2, Isidro Diego3, Sergio Pérez-Holanda4, Francisco Casas-Maldonado5, Cristina Esquinas6, Marc Miravitlles7.
Abstract
In alpha-1 antitrypsin deficiency (AATD), the Z allele is present in 98% of cases with severe disease, and knowledge of the frequency of this allele is essential from a public health perspective. However, there is a remarkable lack of epidemiological data on AATD worldwide, and many of the data currently used are outdated. Therefore, the objective of this study was to update the knowledge of the frequency of the Z allele to achieve accurate estimates of the prevalence and number of Pi*ZZ genotypes worldwide based on studies performed according to the following criteria: 1) samples representative of the general population, 2) AAT phenotyping characterized by adequate methods, and 3) measurements performed using a coefficient of variation calculated from the sample size and 95% confidence intervals. Studies fulfilling these criteria were used to develop maps with an inverse distance weighted (IDW)-interpolation method, providing numerical and graphical information of Pi*Z distribution worldwide. A total of 224 cohorts from 65 countries were included in the study. With the data provided by these cohorts, a total of 253,404 Pi*ZZ were estimated worldwide: 119,594 in Europe, 91,490 in America and Caribbean, 3,824 in Africa, 32,154 in Asia, 4,126 in Australia, and 2,216 in New Zealand. In addition, the IDW-interpolation maps predicted Pi*Z frequencies throughout the world even in some areas that lack real data. In conclusion, the inclusion of new well-designed studies and the exclusion of the low-quality ones have significantly improved the reliability of results, which may be useful to plan strategies for future research and diagnosis and to rationalize the therapeutic resources available.Entities:
Keywords: SERPINA1; alpha-1 antitrypsin deficiency; genetic epidemiology; geographic information system; inverse distance weighted interpolation; protease inhibitor
Mesh:
Substances:
Year: 2017 PMID: 28243076 PMCID: PMC5315200 DOI: 10.2147/COPD.S125389
Source DB: PubMed Journal: Int J Chron Obstruct Pulmon Dis ISSN: 1176-9106
Estimated Pi*Z allele frequency (per 1,000), Pi*ZZ gene prevalence (1:x), and number of Pi*ZZ genotypes among 25 European countries
| Geographic region (number of countries) | Country (total population) | Number of cohorts | Number of subjects | Pi*Z frequency (95% CI) | Pi*ZZ prevalence (mean) | Number of Pi*ZZ (95% CI) |
|---|---|---|---|---|---|---|
| Northern Europe (8) | Denmark (5,594,000) | 2 | 10,096 | 27 (25–29) | 1:1,368 | 4,090 (3,459–4,834) |
| Estonia (1,258,545) | 2 | 1,636 | 24 (19–30) | 1:1,663 | 752 (481–1,170) | |
| Finland (5,498,211) | 2 | 8,836 | 19 (17–21) | 1:2,850 | 1,929 (1,553–2,394) | |
| Iceland (335,878) | 1 | 94 | 0 (0–19) | 1:infinite | 0 (0–127) | |
| Latvia (1,965,686) | 1 | 288 | 45 (30–66) | 1:491 | 4,005 (1,802–8,648) | |
| Lithuania (2,854,235) | 1 | 1,577 | 16 (12–21) | 1:3,979 | 717 (405–1,261) | |
| Norway (5,265,158) | 4 | 4,492 | 18 (16–21) | 1:2,929 | 1,798 (1,321–2,442) | |
| Sweden (9,880,604) | 11 | 5,750 | 15 (13–17) | 1:4,368 | 2,262 (1,674–3,052) | |
| Total/mean | 24 | 32,769 | 20 | 2,041 | 15,553 | |
| Western Europe (7) | Belgium (11,409,077) | 1 | 1,345 | 17 (12–22) | 1:3,573 | 3,193 (1,745–5,787) |
| France (66,836,154) | 8 | 7,233 | 16 (14–18) | 1:3,888 | 17,191 (13,255–22,270) | |
| England (53,012,456) | 3 | 2,832 | 15 (12–18) | 1:4,440 | 11,939 (7,729–18,360) | |
| The Netherlands (17,016,967) | 4 | 1,466 | 18 (13–23) | 1:3,179 | 5,353 (3,057–9,298) | |
| Northern Ireland (1,810,863) | 1 | 1,000 | 20 (15–28) | 1:2,380 | 761 (404–1,417) | |
| Republic of Ireland (4,757,976) | 1 | 1,100 | 22 (16–29) | 1:2,101 | 2,265 (1,264–4,019) | |
| Scotland (5,295,000) | 3 | 2,543 | 8 (6–11) | 1:15,388 | 344 (182–644) | |
| Total/mean | 21 | 17,519 | 17 | 1:4,992 | 41,046 | |
| Central Europe (4) | Austria (8,711,770) | 1 | 868 | 13 (9–20) | 1:5,697 | 1,529 (646–3,536) |
| Germany (80,722,792) | 5 | 2,691 | 16 (13–20) | 1:3,916 | 20,611 (13,380–31,626) | |
| Poland (38,523,261) | 5 | 3,201 | 13 (11–16) | 1:5,673 | 6,791 (4,395–10,454) | |
| Switzerland (8,179,294) | 1 | 1,148 | 11 (7–17) | 1:7,798 | 972 (434–2,139) | |
| Total/mean | 12 | 7,908 | 13 | 5,771 | 29,903 | |
| Southern Europe (3) | Italy (62,007,540) | 4 | 3,586 | 13 (11–16) | 1:5,821 | 10,652 (7,046–16,049) |
| Portugal (10,833,816) | 4 | 1,498 | 21 (15–30) | 1:2,191 | 4,944 (2,403–10,004) | |
| Spain (48,563,476) | 4 | 2,458 | 17 (14–21) | 1:3,344 | 14,522 (9,405–22,331) | |
| Total/mean | 12 | 7,542 | 17 | 3,785 | 30,118 | |
| Eastern Europe (3) | Macedonia (2,100,025) | 4 | 441 | 8 (4–18) | 1:14,814 | 142 (27–654) |
| Russia (142,355,415) | 16 | 8,364 | 3 (2–4) | 1:86,127 | 1,653 (966–2,813) | |
| Serbia (7,143,921) | 1 | 1,060 | 12 (8–19) | 1:6,165 | 1,159 (525–2,510) | |
| Total/mean | 21 | 9,865 | 8 | 35,702 | 2,954 | |
| Total Pi*ZZ genotypes in Europe: 119,594 | ||||||
Abbreviation: CI, confidence interval.
Estimated Pi*Z allele frequency (per 1,000), Pi*ZZ gene prevalence (Hardy–Weinberg statistics, 1:x), and number of Pi*ZZ genotypes in 23 North, South, and Central American countries
| Geographic region (number of countries) | Country (total population) | Number of cohorts | Number of subjects | Pi*Z frequency (95% CI) | Pi*ZZ prevalence (mean) | Number of Pi*ZZ (95% CI) |
|---|---|---|---|---|---|---|
| North America (3) | Canada (35,362,905) | 5 | 4,807 | 14 (12–16) | 1:4,925 | 7,181 (5,109–10,072) |
| 15 | 17,032 | 15 (14–17) | 1:4,126 | 62,820 (52,951–74,501) | ||
| Mexico (123,166,749) | 2 | 3,279 | 6 (4–8) | 1:31,415 | 3,921 (2,002–7,599) | |
| Total/mean | 22 | 25,118 | 12 | 1:13,489 | 73,922 | |
| Central America and Caribbean (10) | Costa Rica (4,872,543) | 1 | 3,000 | 8 (6–10) | 1:17,013 | 286 (157–517) |
| Cuba (11,179,995) | 1 | 3,000 | 7 (5–9) | 1:20,408 | 548 (292–1,018) | |
| Dominican Republic (10,606,865) | 1 | 3,000 | 6 (4–9) | 1:24,931 | 425 (219–817) | |
| El Salvador (6,156,670) | 1 | 3,000 | 7 (5–9) | 1:22,500 | 274 (144–517) | |
| Guatemala (15,189,958) | 1 | 3,000 | 6 (4–8) | 1:31,142 | 488 (242–973) | |
| Haiti (10,485,800) | 1 | 3,000 | 1 (0.7–3) | 1:444,444 | 24 (6–92) | |
| Honduras (8,893,259) | 1 | 3,000 | 6 (4–9) | 1:24,931 | 357 (184–685) | |
| Jamaica (2,970,340) | 1 | 3,000 | 1 (0.7–3) | 1:444,444 | 7 (2–26) | |
| Nicaragua (5,966,798) | 1 | 3,000 | 6 (4–9) | 1:24,931 | 239 (123–460) | |
| Panama (3,705,246) | 1 | 3,000 | 6 (4–8) | 1:27,778 | 133 (67–261) | |
| Total/mean | 10 | 30,000 | 5 | 1:108,252 | 2,781 | |
| South America (10) | Argentina (43,886,748) | 1 | 3,000 | 6 (4–8) | 1:26,297 | 1,669 (852–3,234) |
| Bolivia (10,969,649) | 1 | 3,000 | 6 (4–8) | 1:30,298 | 305 (152–606) | |
| Brazil (205,823,665) | 1 | 3,000 | 6 (4–8) | 1:31,142 | 6,162 (3,053–12,297) | |
| Chile (17,650,114) | 1 | 3,000 | 6 (4–9) | 1:24,931 | 708 (365–1,360) | |
| Colombia (47,220,856) | 1 | 3,000 | 6 (5–9) | 1:23,669 | 1,995 (1,038–3,799) | |
| Ecuador (16,080,778) | 1 | 3,000 | 6 (4–8) | 1:27,778 | 579 (293–1,132) | |
| Paraguay (6,862,812) | 1 | 3,000 | 7 (5–9) | 1:22,500 | 305 (160–576) | |
| Peru (30,741,062) | 1 | 3,000 | 6 (4–8) | 1:29,388 | 1,046 (524–2,066) | |
| Uruguay (3,351,016) | 1 | 3,000 | 6 (4–8) | 1:27,778 | 121 (61–236) | |
| Venezuela (30,912,302) | 1 | 3,000 | 8 (6–10) | 1:16,287 | 1,897 (1,049–3,405) | |
| Total/mean | 10 | 30,000 | 6 | 1:26,002 | 14,787 | |
| Total Pi*ZZ genotypes in America: 91,490 | ||||||
Note:
The numbers reported for the US refer only to the non-Hispanic white population, due to the lack of reliable studies in other ethnic groups.
Abbreviation: CI, confidence interval.
Estimated Pi*Z allele frequency (per 1,000), Pi*ZZ gene prevalence (1:x), and number of Pi*ZZ genotypes in 10 African countries
| Geographic region (number of countries) | Country (total population) | Number of cohorts | Number of subjects | Pi*Z frequency (95% CI) | Pi*ZZ prevalence (mean) | Number of Pi*ZZ (95% CI) |
|---|---|---|---|---|---|---|
| Africa (10) | Cameroon (24,360,803) | 1 | 266 | 0 (0–7) | 1:infinite | 0 (0–1,163) |
| Cabo Verde Islands (553,432) | 1 | 202 | 2 (0–16) | 1:163,216 | 3 (0–140) | |
| Democratic Republic of the Congo (81,331,050) | 1 | 132 | 0 (0–14) | 1:infinite | 0 (0–15,659) | |
| Morocco (33,655,786) | 1 | 439 | 1 (0–7) | 1:770,884 | 44 (0–1,825) | |
| Mozambique (25,930,150) | 1 | 274 | 0 (0–7) | 1:infinite | 0 (0–1,167) | |
| Nigeria (186,053,386) | 3 | 564 | 3 (1–10) | 1:79,524 | 2,340 (240–17,552) | |
| Republic of the Congo (4,852,412) | 2 | 237 | 0 (0–8) | 1:infinite | 0 (0–292) | |
| Somalia (10,817,350) | 1 | 347 | 11 (5–23) | 1:7,526 | 1,437 (312–5,986) | |
| South Africa (54,300,704) | 1 | 732 | 0 (0–2) | 1:infinite | 0 (0–344) | |
| Tunisia (10,937,521) | 5 | 1,838 | 0 (0–2) | 1:infinite | 0 (0–11) | |
| Total/mean | 17 | 5,031 | 2 | – | 3,824 |
Abbreviation: CI, confidence interval.
Estimated Pi*Z allele frequency (per 1,000), Pi*ZZ gene prevalence (1:x), and number of Pi*ZZ genotypes in 15 Asian countries
| Geographic region (number of countries) | Country (total population) | Number of cohorts | Number of subjects | Pi*Z frequency (95% CI) | Pi*ZZ prevalence (mean) | Number of Pi*ZZ (95% CI) |
|---|---|---|---|---|---|---|
| Middle East (1) | Iran (82,801,633) | 6 | 1,348 | 7 (4–11) | 1:22,433 | 3,691 (1,381–9,579) |
| Central Asia (1) | Kazakhstan (18,360,353) | 4 | 417 | 2 (0–9) | 1:173,889 | 106 (3–1,700) |
| East and Southeast | China (1,373,541,278) | 19 | 6,594 | 0 (0–0.3) | 1:infinite | 0 (0–107) |
| Asia (10) | Indonesia (258,316,051) | 5 | 724 | 0 (0–2) | 1:infinite | 0 (0–1,672) |
| Japan (126,702,133) | 7 | 6,010 | 0 (0–6) | 1:36,120,100 | 4 (0–57) | |
| Malaysia (30,949,962) | 2 | 1,279 | 0 (0–1) | 1:infinite | 0 (0–64) | |
| Mongolia (3,031,330) | 1 | 505 | 0 (0–4) | 1:infinite | 0 (0–40) | |
| Papua New Guinea (6,791,317) | 2 | 337 | 0 (0–5) | 1:infinite | 0 (0–202) | |
| Philippines (102,624,209) | 1 | 243 | 0 (0–7) | 1:infinite | 0 (0–5,868) | |
| Singapore (5,781,728) | 2 | 545 | 0 (0–3) | 1:infinite | 0 (0–66) | |
| South Korea (50,924,172) | 2 | 487 | 6 (2–14) | 1:26,352 | 1,932 (320–10,082) | |
| Thailand (68,200,824) | 2 | 852 | 11 (7–18) | 1:8.043 | 8,479 (3,266–21,380) | |
| Total/mean | 43 | 17,576 | 2 | – | 10,415 | |
| South Asia (3) | Nepal (29,033,914) | 1 | 144 | 0 (0–12) | 1:infinite | 0 (4,703) |
| Pakistan (201,995,540) | 1 | 269 | 9 (3–23) | 1:11,578 | 17,447 (2,372–105,463) | |
| India (1,266,883,598) | 11 | 1,599 | 0.6 (0.1–2) | 1:2,556,801 | 495 (15–8,040) | |
| Total/mean | 13 | 2,012 | 3 | – | 17,942 | |
| Total Pi*ZZ genotypes in Asia: 32,154 | ||||||
Abbreviation: CI, confidence interval.
Estimated Pi*Z allele frequency (per 1,000), Pi*ZZ gene prevalence (1:x), and number of Pi*ZZ genotypes in Australia and New Zealand
| Geographic region | Country (total population) | Number of cohorts | Number of subjects | Pi*Z frequency (95% CI) | Pi*ZZ prevalence (mean) | Number of Pi*ZZ (95% CI) |
|---|---|---|---|---|---|---|
| Australia and New Zealand | Australia (22,992,654) | 8 | 5,536 | 13 (11–16) | 1:5,572 | 4,126 (2,894–5,695) |
| New Zealand (4,474,549) | 1 | 1,303 | 22 (17–29) | 1:2,019 | 2,216 (1,307–3,731) | |
| Total Pi*ZZ genotypes in Australia and New Zealand: 6,342 | ||||||
Abbreviation: CI, confidence interval.
Figure 1Distribution of Pi*Z frequencies in Europe (×1,000).
Abbreviation: IDW, inverse distance weighted.
Figure 2Distribution of Pi*Z frequencies in the world (×1,000).
Abbreviation: IDW, inverse distance weighted.
Figure 3IDW-interpolation map of Pi*Z distribution worldwide.
Abbreviation: IDW, inverse distance weighted.