Literature DB >> 24747738

Automatic clustering and population analysis of white matter tracts using maximum density paths.

Gautam Prasad1, Shantanu H Joshi2, Neda Jahanshad1, Julio Villalon-Reina1, Iman Aganj3, Christophe Lenglet4, Guillermo Sapiro5, Katie L McMahon6, Greig I de Zubicaray7, Nicholas G Martin8, Margaret J Wright9, Arthur W Toga10, Paul M Thompson11.   

Abstract

We introduce a framework for population analysis of white matter tracts based on diffusion-weighted images of the brain. The framework enables extraction of fibers from high angular resolution diffusion images (HARDI); clustering of the fibers based partly on prior knowledge from an atlas; representation of the fiber bundles compactly using a path following points of highest density (maximum density path; MDP); and registration of these paths together using geodesic curve matching to find local correspondences across a population. We demonstrate our method on 4-Tesla HARDI scans from 565 young adults to compute localized statistics across 50 white matter tracts based on fractional anisotropy (FA). Experimental results show increased sensitivity in the determination of genetic influences on principal fiber tracts compared to the tract-based spatial statistics (TBSS) method. Our results show that the MDP representation reveals important parts of the white matter structure and considerably reduces the dimensionality over comparable fiber matching approaches.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Atlas; Brain; Clustering; Connectivity; Curve registration; Dijkstra; Geodesic distance; HARDI; Hough; Longest path; MRI; Maximum density path; Shortest path; Tractography

Mesh:

Year:  2014        PMID: 24747738      PMCID: PMC4065851          DOI: 10.1016/j.neuroimage.2014.04.033

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  81 in total

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2.  Fiber density index correlates with reduced fractional anisotropy in white matter of patients with glioblastoma.

Authors:  Tim P L Roberts; Fang Liu; Andrea Kassner; Susumu Mori; Abhijit Guha
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3.  Selective reduction of diffusion anisotropy in white matter of Alzheimer disease brains measured by 3.0 Tesla magnetic resonance imaging.

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4.  Disrupted brain networks in the aging HIV+ population.

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5.  Genetics of brain fiber architecture and intellectual performance.

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Journal:  J Neurosci       Date:  2009-02-18       Impact factor: 6.167

6.  Unsupervised white matter fiber clustering and tract probability map generation: applications of a Gaussian process framework for white matter fibers.

Authors:  D Wassermann; L Bloy; E Kanterakis; R Verma; R Deriche
Journal:  Neuroimage       Date:  2010-01-14       Impact factor: 6.556

7.  Tract-based morphometry for white matter group analysis.

Authors:  Lauren J O'Donnell; Carl-Fredrik Westin; Alexandra J Golby
Journal:  Neuroimage       Date:  2008-12-25       Impact factor: 6.556

8.  Tract profiles of white matter properties: automating fiber-tract quantification.

Authors:  Jason D Yeatman; Robert F Dougherty; Nathaniel J Myall; Brian A Wandell; Heidi M Feldman
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

9.  Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: a pilot project of the ENIGMA-DTI working group.

Authors:  Neda Jahanshad; Peter V Kochunov; Emma Sprooten; René C Mandl; Thomas E Nichols; Laura Almasy; John Blangero; Rachel M Brouwer; Joanne E Curran; Greig I de Zubicaray; Ravi Duggirala; Peter T Fox; L Elliot Hong; Bennett A Landman; Nicholas G Martin; Katie L McMahon; Sarah E Medland; Braxton D Mitchell; Rene L Olvera; Charles P Peterson; John M Starr; Jessika E Sussmann; Arthur W Toga; Joanna M Wardlaw; Margaret J Wright; Hilleke E Hulshoff Pol; Mark E Bastin; Andrew M McIntosh; Ian J Deary; Paul M Thompson; David C Glahn
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

10.  Improved DTI registration allows voxel-based analysis that outperforms tract-based spatial statistics.

Authors:  Christopher G Schwarz; Robert I Reid; Jeffrey L Gunter; Matthew L Senjem; Scott A Przybelski; Samantha M Zuk; Jennifer L Whitwell; Prashanthi Vemuri; Keith A Josephs; Kejal Kantarci; Paul M Thompson; Ronald C Petersen; Clifford R Jack
Journal:  Neuroimage       Date:  2014-03-18       Impact factor: 6.556

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  10 in total

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Authors:  Fan Zhang; Suheyla Cetin Karayumak; Nico Hoffmann; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Med Image Anal       Date:  2020-06-24       Impact factor: 8.545

3.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

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Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

4.  Skull-stripping with machine learning deformable organisms.

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Journal:  J Neurosci Methods       Date:  2014-08-12       Impact factor: 2.390

5.  Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease.

Authors:  Talia M Nir; Julio E Villalon-Reina; Gautam Prasad; Neda Jahanshad; Shantanu H Joshi; Arthur W Toga; Matt A Bernstein; Clifford R Jack; Michael W Weiner; Paul M Thompson
Journal:  Neurobiol Aging       Date:  2014-08-27       Impact factor: 4.673

6.  Mapping population-based structural connectomes.

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7.  Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.

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8.  GENETIC ANALYSIS OF STRUCTURAL BRAIN CONNECTIVITY USING DICCCOL MODELS OF DIFFUSION MRI IN 522 TWINS.

Authors:  Dajiang Zhu; Liang Zhan; Joshua Faskowitz; Madelaine Daianu; Neda Jahanshad; Greig I de Zubicaray; Katie L McMahon; Nicholas G Martin; Margaret J Wright; Paul M Thompson
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9.  Structural abnormality of the corticospinal tract in major depressive disorder.

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Journal:  Biol Mood Anxiety Disord       Date:  2014-09-10

10.  Maturation Along White Matter Tracts in Human Brain Using a Diffusion Tensor Surface Model Tract-Specific Analysis.

Authors:  Zhang Chen; Hui Zhang; Paul A Yushkevich; Min Liu; Christian Beaulieu
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  10 in total

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