Literature DB >> 25416278

Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.

Jane F Ferguson1, Nuala J Meyer2, Liming Qu3, Chenyi Xue3, Yichuan Liu3, Stephanie L DerOhannessian4, Melanie Rushefski2, Georgios K Paschos5, Soonyew Tang5, Eric E Schadt6, Mingyao Li3, Jason D Christie2, Muredach P Reilly4.   

Abstract

Fever predicts clinical outcomes in sepsis, trauma and during cardiovascular stress, yet the genetic determinants are poorly understood. We used an integrative genomics approach to identify novel genomic determinants of the febrile response to experimental endotoxemia. We highlight multiple integrated lines of evidence establishing the clinical relevance of this novel fever locus. Through genome-wide association study (GWAS) of evoked endotoxemia (lipopolysaccharide (LPS) 1 ng/kg IV) in healthy subjects of European ancestry we discovered a locus on chr7p11.2 significantly associated with the peak febrile response to LPS (top single nucleotide polymorphism (SNP) rs7805622, P = 2.4 × 10(-12)), as well as with temperature fluctuation over time. We replicated this association in a smaller independent LPS study (rs7805622, P = 0.03). In clinical translation, this locus was also associated with temperature and mortality in critically ill patients with trauma or severe sepsis. The top GWAS SNPs are not located within protein-coding genes, but have significant cis-expression quantitative trait loci (eQTL) associations with expression of a cluster of genes ∼400 kb upstream, several of which (SUMF2, CCT6A, GBAS) are regulated by LPS in vivo in blood cells. LPS- and cold-treatment of adipose stromal cells in vitro suggest genotype-specific modulation of eQTL candidate genes (PSPH). Several eQTL genes were up-regulated in brown and white adipose following cold exposure in mice, highlighting a potential role in thermogenesis. Thus, through genomic interrogation of experimental endotoxemia, we identified and replicated a novel fever locus on chr7p11.2 that modulates clinical responses in trauma and sepsis, and highlight integrated in vivo and in vitro evidence for possible novel cis candidate genes conserved across human and mouse.
© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2014        PMID: 25416278      PMCID: PMC4351381          DOI: 10.1093/hmg/ddu589

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  46 in total

1.  Inflammatory response: pathway across the blood-brain barrier.

Authors:  M Ek; D Engblom; S Saha; A Blomqvist; P J Jakobsson; A Ericsson-Dahlstrand
Journal:  Nature       Date:  2001-03-22       Impact factor: 49.962

2.  Phosphoserine phosphatase deficiency in a patient with Williams syndrome.

Authors:  J Jaeken; M Detheux; J P Fryns; J F Collet; P Alliet; E Van Schaftingen
Journal:  J Med Genet       Date:  1997-07       Impact factor: 6.318

Review 3.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

4.  Cyclooxygenase-2 mediates the febrile response of mice to interleukin-1beta.

Authors:  S Li; L R Ballou; S G Morham; C M Blatteis
Journal:  Brain Res       Date:  2001-08-10       Impact factor: 3.252

Review 5.  Fever and the heat shock response: distinct, partially overlapping processes.

Authors:  J D Hasday; I S Singh
Journal:  Cell Stress Chaperones       Date:  2000-11       Impact factor: 3.667

6.  The Genotype-Tissue Expression (GTEx) project.

Authors: 
Journal:  Nat Genet       Date:  2013-06       Impact factor: 38.330

Review 7.  Response of man to endotoxin.

Authors:  G D Martich; A J Boujoukos; A F Suffredini
Journal:  Immunobiology       Date:  1993-04       Impact factor: 3.144

8.  Fat cells directly sense temperature to activate thermogenesis.

Authors:  Li Ye; Jun Wu; Paul Cohen; Lawrence Kazak; Melin J Khandekar; Mark P Jedrychowski; Xing Zeng; Steven P Gygi; Bruce M Spiegelman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

9.  Central administration of serine causes hypothermia and inhibits fever in rabbits.

Authors:  J R Glyn; J M Lipton
Journal:  Brain Res Bull       Date:  1980 Nov-Dec       Impact factor: 4.077

10.  Omega-3 PUFA supplementation and the response to evoked endotoxemia in healthy volunteers.

Authors:  Jane F Ferguson; Claire K Mulvey; Parth N Patel; Rhia Y Shah; Julia Doveikis; Weiyu Zhang; Jennifer Tabita-Martinez; Karen Terembula; Michael Eiden; Albert Koulman; Julian L Griffin; Nehal N Mehta; Rachana Shah; Kathleen J Propert; Wen-Liang Song; Muredach P Reilly
Journal:  Mol Nutr Food Res       Date:  2013-11-05       Impact factor: 5.914

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  12 in total

1.  A likelihood-based approach to transcriptome association analysis.

Authors:  Jing Qian; Evan Ray; Regina L Brecha; Muredach P Reilly; Andrea S Foulkes
Journal:  Stat Med       Date:  2018-12-04       Impact factor: 2.373

2.  Fever control.

Authors:  Paul J Young; Niklas Nielsen; Manoj Saxena
Journal:  Intensive Care Med       Date:  2017-10-22       Impact factor: 17.440

3.  Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.

Authors:  Andrew C Liu; Krishna Patel; Ramya Dhatri Vunikili; Kipp W Johnson; Fahad Abdu; Shivani Kamath Belman; Benjamin S Glicksberg; Pratyush Tandale; Roberto Fontanez; Oommen K Mathew; Andrew Kasarskis; Priyabrata Mukherjee; Lakshminarayanan Subramanian; Joel T Dudley; Khader Shameer
Journal:  Brief Bioinform       Date:  2020-07-15       Impact factor: 11.622

4.  Downregulation of SUMF2 gene in ovalbumin-induced rat model of allergic inflammation.

Authors:  Chuanfeng Fang; Xiaoxia Li; Hongyan Liang; Li Xue; Lei Liu; Chun Yang; Guangqiang Gao; Xiaofeng Jiang
Journal:  Int J Clin Exp Pathol       Date:  2015-10-01

Review 5.  Human experimental endotoxemia in modeling the pathophysiology, genomics, and therapeutics of innate immunity in complex cardiometabolic diseases.

Authors:  Parth N Patel; Rhia Y Shah; Jane F Ferguson; Muredach P Reilly
Journal:  Arterioscler Thromb Vasc Biol       Date:  2014-12-30       Impact factor: 8.311

6.  A score test for genetic class-level association with nonlinear biomarker trajectories.

Authors:  Jing Qian; Sara Nunez; Soohyun Kim; Muredach P Reilly; Andrea S Foulkes
Journal:  Stat Med       Date:  2017-05-23       Impact factor: 2.373

7.  Stochastic imputation for integrated transcriptome association analysis of a longitudinally measured trait.

Authors:  Evan L Ray; Jing Qian; Regina Brecha; Muredach P Reilly; Andrea S Foulkes
Journal:  Stat Methods Med Res       Date:  2019-06-07       Impact factor: 3.021

8.  Low Plasma Levels of Adiponectin Do Not Explain Acute Respiratory Distress Syndrome Risk: a Prospective Cohort Study of Patients with Severe Sepsis.

Authors:  Jessica A Palakshappa; Brian J Anderson; John P Reilly; Michael G S Shashaty; Ryo Ueno; Qufei Wu; Caroline A G Ittner; Anna Tommasini; Thomas G Dunn; Dudley Charles; Altaf Kazi; Jason D Christie; Nuala J Meyer
Journal:  Crit Care       Date:  2016-03-16       Impact factor: 9.097

9.  Plasma angiopoietin-2 as a potential causal marker in sepsis-associated ARDS development: evidence from Mendelian randomization and mediation analysis.

Authors:  John P Reilly; Fan Wang; Tiffanie K Jones; Jessica A Palakshappa; Brian J Anderson; Michael G S Shashaty; Thomas G Dunn; Erik D Johansson; Thomas R Riley; Brian Lim; Jason Abbott; Caroline A G Ittner; Edward Cantu; Xihong Lin; Carmen Mikacenic; Mark M Wurfel; David C Christiani; Carolyn S Calfee; Michael A Matthay; Jason D Christie; Rui Feng; Nuala J Meyer
Journal:  Intensive Care Med       Date:  2018-10-21       Impact factor: 17.440

10.  Genomic Insights Into Sepsis Course Using Whole Exome Sequencing.

Authors:  Carlos Flores; Beatriz Guillen-Guio
Journal:  EBioMedicine       Date:  2016-09-24       Impact factor: 8.143

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