Literature DB >> 20525534

Technology-aware algorithm design for neural spike detection, feature extraction, and dimensionality reduction.

Sarah Gibson1, Jack W Judy, Dejan Marković.   

Abstract

Applications such as brain-machine interfaces require hardware spike sorting in order to 1) obtain single-unit activity and 2) perform data reduction for wireless data transmission. Such systems must be low-power, low-area, high-accuracy, automatic, and able to operate in real time. Several detection, feature-extraction, and dimensionality-reduction algorithms for spike sorting are described and evaluated in terms of accuracy versus complexity. The nonlinear energy operator is chosen as the optimal spike-detection algorithm, being most robust over noise and relatively simple. Discrete derivatives is chosen as the optimal feature-extraction method, maintaining high accuracy across signal-to-noise ratios with a complexity orders of magnitude less than that of traditional methods such as principal-component analysis. We introduce the maximum-difference algorithm, which is shown to be the best dimensionality-reduction method for hardware spike sorting.

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Year:  2010        PMID: 20525534     DOI: 10.1109/TNSRE.2010.2051683

Source DB:  PubMed          Journal:  IEEE Trans Neural Syst Rehabil Eng        ISSN: 1534-4320            Impact factor:   3.802


  10 in total

1.  Minimum requirements for accurate and efficient real-time on-chip spike sorting.

Authors:  Joaquin Navajas; Deren Y Barsakcioglu; Amir Eftekhar; Andrew Jackson; Timothy G Constandinou; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2014-04-24       Impact factor: 2.390

2.  Power-saving design opportunities for wireless intracortical brain-computer interfaces.

Authors:  Nir Even-Chen; Dante G Muratore; Sergey D Stavisky; Leigh R Hochberg; Jaimie M Henderson; Boris Murmann; Krishna V Shenoy
Journal:  Nat Biomed Eng       Date:  2020-08-03       Impact factor: 25.671

3.  Complexity optimization and high-throughput low-latency hardware implementation of a multi-electrode spike-sorting algorithm.

Authors:  Jelena Dragas; David Jackel; Andreas Hierlemann; Felix Franke
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2014-11-13       Impact factor: 3.802

4.  An unsupervised method for on-chip neural spike detection in multi-electrode recording systems.

Authors:  Jelena Dragas; David Jäckel; Felix Franke; Andreas Hierlemann
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2013

5.  Strategies for high-performance resource-efficient compression of neural spike recordings.

Authors:  Palmi Thor Thorbergsson; Martin Garwicz; Jens Schouenborg; Anders J Johansson
Journal:  PLoS One       Date:  2014-04-11       Impact factor: 3.240

6.  A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

Authors:  Giulia Regalia; Stefania Coelli; Emilia Biffi; Giancarlo Ferrigno; Alessandra Pedrocchi
Journal:  Comput Intell Neurosci       Date:  2016-04-27

7.  Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.

Authors:  Jens-Oliver Muthmann; Hayder Amin; Evelyne Sernagor; Alessandro Maccione; Dagmara Panas; Luca Berdondini; Upinder S Bhalla; Matthias H Hennig
Journal:  Front Neuroinform       Date:  2015-12-18       Impact factor: 4.081

8.  Efficient architecture for spike sorting in reconfigurable hardware.

Authors:  Wen-Jyi Hwang; Wei-Hao Lee; Shiow-Jyu Lin; Sheng-Ying Lai
Journal:  Sensors (Basel)       Date:  2013-11-01       Impact factor: 3.576

9.  Spike detection based on normalized correlation with automatic template generation.

Authors:  Wen-Jyi Hwang; Szu-Huai Wang; Ya-Tzu Hsu
Journal:  Sensors (Basel)       Date:  2014-06-23       Impact factor: 3.576

10.  Low-latency single channel real-time neural spike sorting system based on template matching.

Authors:  Pan Ke Wang; Sio Hang Pun; Chang Hao Chen; Elizabeth A McCullagh; Achim Klug; Anan Li; Mang I Vai; Peng Un Mak; Tim C Lei
Journal:  PLoS One       Date:  2019-11-22       Impact factor: 3.240

  10 in total

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