Literature DB >> 25413209

Metabolic engineering of strains: from industrial-scale to lab-scale chemical production.

Jie Sun1, Hal S Alper.   

Abstract

A plethora of successful metabolic engineering case studies have been published over the past several decades. Here, we highlight a collection of microbially produced chemicals using a historical framework, starting with titers ranging from industrial scale (more than 50 g/L), to medium-scale (5-50 g/L), and lab-scale (0-5 g/L). Although engineered Escherichia coli and Saccharomyces cerevisiae emerge as prominent hosts in the literature as a result of well-developed genetic engineering tools, several novel native-producing strains are gaining attention. This review catalogs the current progress of metabolic engineering towards production of compounds such as acids, alcohols, amino acids, natural organic compounds, and others.

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Year:  2014        PMID: 25413209     DOI: 10.1007/s10295-014-1539-8

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  162 in total

1.  Anaerobic obligatory xylitol production in Escherichia coli strains devoid of native fermentation pathways.

Authors:  Olubolaji Akinterinwa; Patrick C Cirino
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Multivariate modular metabolic engineering of Escherichia coli to produce resveratrol from L-tyrosine.

Authors:  Junjun Wu; Peiran Liu; Yongming Fan; Han Bao; Guocheng Du; Jingwen Zhou; Jian Chen
Journal:  J Biotechnol       Date:  2013-07-31       Impact factor: 3.307

Review 3.  Recombinant organisms for production of industrial products.

Authors:  Jose-Luis Adrio; Arnold L Demain
Journal:  Bioeng Bugs       Date:  2009-11-02

4.  Using unnatural protein fusions to engineer resveratrol biosynthesis in yeast and Mammalian cells.

Authors:  Yansheng Zhang; Song-Zhe Li; Jia Li; Xiangqing Pan; Rebecca E Cahoon; Jan G Jaworski; Xuemin Wang; Joseph M Jez; Feng Chen; Oliver Yu
Journal:  J Am Chem Soc       Date:  2006-10-11       Impact factor: 15.419

5.  Yeast surface display of trifunctional minicellulosomes for simultaneous saccharification and fermentation of cellulose to ethanol.

Authors:  Fei Wen; Jie Sun; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Engineering Escherichia coli for production of functionalized terpenoids using plant P450s.

Authors:  Michelle C Y Chang; Rachel A Eachus; William Trieu; Dae-Kyun Ro; Jay D Keasling
Journal:  Nat Chem Biol       Date:  2007-04-15       Impact factor: 15.040

7.  Engineered biosynthesis of bacterial aromatic polyketides in Escherichia coli.

Authors:  Wenjun Zhang; Yanran Li; Yi Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

8.  Microbial conversion of glycerol to 1,3-propanediol by an engineered strain of Escherichia coli.

Authors:  Xueming Tang; Yongsong Tan; Hong Zhu; Kai Zhao; Wei Shen
Journal:  Appl Environ Microbiol       Date:  2009-01-09       Impact factor: 4.792

9.  An efficient succinic acid production process in a metabolically engineered Corynebacterium glutamicum strain.

Authors:  Shohei Okino; Ryoji Noburyu; Masako Suda; Toru Jojima; Masayuki Inui; Hideaki Yukawa
Journal:  Appl Microbiol Biotechnol       Date:  2008-09-06       Impact factor: 4.813

Review 10.  The threonine story.

Authors:  Vladimir G Debabov
Journal:  Adv Biochem Eng Biotechnol       Date:  2003       Impact factor: 2.635

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  12 in total

1.  Combinatorial metabolic pathway assembly in the yeast genome with RNA-guided Cas9.

Authors:  Steve F EauClaire; Jianzhong Zhang; Corban Gregory Rivera; Lixuan L Huang
Journal:  J Ind Microbiol Biotechnol       Date:  2016-05-02       Impact factor: 3.346

2.  Improvement of lactic acid production in Saccharomyces cerevisiae by a deletion of ssb1.

Authors:  Jinsuk J Lee; Nathan Crook; Jie Sun; Hal S Alper
Journal:  J Ind Microbiol Biotechnol       Date:  2015-12-11       Impact factor: 3.346

3.  Lean-proteome strains - next step in metabolic engineering.

Authors:  Kaspar Valgepea; Karl Peebo; Kaarel Adamberg; Raivo Vilu
Journal:  Front Bioeng Biotechnol       Date:  2015-02-06

4.  Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity.

Authors:  Christophe Magnan; James Yu; Ivan Chang; Ethan Jahn; Yuzo Kanomata; Jenny Wu; Michael Zeller; Melanie Oakes; Pierre Baldi; Suzanne Sandmeyer
Journal:  PLoS One       Date:  2016-09-07       Impact factor: 3.240

5.  Assessing Inhalation Exposures Associated with Contamination Events in Water Distribution Systems.

Authors:  Michael J Davis; Robert Janke; Thomas N Taxon
Journal:  PLoS One       Date:  2016-12-08       Impact factor: 3.240

6.  Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast.

Authors:  Aymerick Eudes; Maxence Mouille; David S Robinson; Veronica T Benites; George Wang; Lucien Roux; Yi-Lin Tsai; Edward E K Baidoo; Tsan-Yu Chiu; Joshua L Heazlewood; Henrik V Scheller; Aindrila Mukhopadhyay; Jay D Keasling; Samuel Deutsch; Dominique Loqué
Journal:  Microb Cell Fact       Date:  2016-11-21       Impact factor: 5.328

7.  Yeast metabolic chassis designs for diverse biotechnological products.

Authors:  Paula Jouhten; Tomasz Boruta; Sergej Andrejev; Filipa Pereira; Isabel Rocha; Kiran Raosaheb Patil
Journal:  Sci Rep       Date:  2016-07-19       Impact factor: 4.379

Review 8.  Expanding beyond canonical metabolism: Interfacing alternative elements, synthetic biology, and metabolic engineering.

Authors:  Kevin B Reed; Hal S Alper
Journal:  Synth Syst Biotechnol       Date:  2017-12-19

9.  RNA-aptamers-in-droplets (RAPID) high-throughput screening for secretory phenotypes.

Authors:  Joseph Abatemarco; Maen F Sarhan; James M Wagner; Jyun-Liang Lin; Leqian Liu; Wafa Hassouneh; Shuo-Fu Yuan; Hal S Alper; Adam R Abate
Journal:  Nat Commun       Date:  2017-08-23       Impact factor: 14.919

Review 10.  Synthetic biology for pharmaceutical drug discovery.

Authors:  Jean-Yves Trosset; Pablo Carbonell
Journal:  Drug Des Devel Ther       Date:  2015-12-03       Impact factor: 4.162

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