Literature DB >> 25402031

Dark-field phase retrieval under the constraint of the Friedel symmetry in coherent X-ray diffraction imaging.

Amane Kobayashi, Yuki Sekiguchi, Yuki Takayama, Tomotaka Oroguchi, Masayoshi Nakasako.   

Abstract

Coherent X-ray diffraction imaging (CXDI) is a lensless imaging technique that is suitable for visualizing the structures of non-crystalline particles with micrometer to sub-micrometer dimensions from material science and biology. One of the difficulties inherent to CXDI structural analyses is the reconstruction of electron density maps of specimen particles from diffraction patterns because saturated detector pixels and a beam stopper result in missing data in small-angle regions. To overcome this difficulty, the dark-field phase-retrieval (DFPR) method has been proposed. The DFPR method reconstructs electron density maps from diffraction data, which are modified by multiplying Gaussian masks with an observed diffraction pattern in the high-angle regions. In this paper, we incorporated Friedel centrosymmetry for diffraction patterns into the DFPR method to provide a constraint for the phase-retrieval calculation. A set of model simulations demonstrated that this constraint dramatically improved the probability of reconstructing correct electron density maps from diffraction patterns that were missing data in the small-angle region. In addition, the DFPR method with the constraint was applied successfully to experimentally obtained diffraction patterns with significant quantities of missing data. We also discuss this method's limitations with respect to the level of Poisson noise in X-ray detection.

Mesh:

Year:  2014        PMID: 25402031     DOI: 10.1364/OE.22.027892

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  4 in total

Review 1.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

2.  Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA.

Authors:  Amane Kobayashi; Yuki Sekiguchi; Tomotaka Oroguchi; Koji Okajima; Asahi Fukuda; Mao Oide; Masaki Yamamoto; Masayoshi Nakasako
Journal:  J Synchrotron Radiat       Date:  2016-05-31       Impact factor: 2.616

3.  Shot-by-shot characterization of focused X-ray free electron laser pulses.

Authors:  Amane Kobayashi; Yuki Sekiguchi; Tomotaka Oroguchi; Masaki Yamamoto; Masayoshi Nakasako
Journal:  Sci Rep       Date:  2018-01-16       Impact factor: 4.379

4.  Refinement for single-nanoparticle structure determination from low-quality single-shot coherent diffraction data.

Authors:  Toshiyuki Nishiyama; Akinobu Niozu; Christoph Bostedt; Ken R Ferguson; Yuhiro Sato; Christopher Hutchison; Kiyonobu Nagaya; Hironobu Fukuzawa; Koji Motomura; Shin-Ichi Wada; Tsukasa Sakai; Kenji Matsunami; Kazuhiro Matsuda; Tetsuya Tachibana; Yuta Ito; Weiqing Xu; Subhendu Mondal; Takayuki Umemoto; Christophe Nicolas; Catalin Miron; Takashi Kameshima; Yasumasa Joti; Kensuke Tono; Takaki Hatsui; Makina Yabashi; Kiyoshi Ueda
Journal:  IUCrJ       Date:  2020-01-01       Impact factor: 4.769

  4 in total

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