Literature DB >> 25396342

Beyond the age of cellular discovery.

Jonathan Michael Irish1.   

Abstract

The combination of machine-learning tools and mass-cytometry measurements of more than 30 protein markers per cell comprehensively maps cell identity in the heterogeneous myeloid cell system and reveals the global effect of deletion of the gene encoding the receptor for the growth factor GM-CSF.

Entities:  

Mesh：

Year:  2014        PMID： 25396342     DOI： 10.1038/ni.3034

Source DB:  PubMed          Journal:  Nat Immunol        ISSN： 1529-2908            Impact factor:   25.606


  11 in total

1.  Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE).

Authors:  Karthik Shekhar; Petter Brodin; Mark M Davis; Arup K Chakraborty
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-16       Impact factor: 11.205

2.  Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.

Authors:  Sean C Bendall; Kara L Davis; El-Ad David Amir; Michelle D Tadmor; Erin F Simonds; Tiffany J Chen; Daniel K Shenfeld; Garry P Nolan; Dana Pe'er
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

3.  Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes.

Authors:  Evan W Newell; Natalia Sigal; Sean C Bendall; Garry P Nolan; Mark M Davis
Journal:  Immunity       Date:  2012-01-27       Impact factor: 31.745

4.  Automated identification of stratifying signatures in cellular subpopulations.

Authors:  Robert V Bruggner; Bernd Bodenmiller; David L Dill; Robert J Tibshirani; Garry P Nolan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-16       Impact factor: 11.205

5.  viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.

Authors:  El-ad David Amir; Kara L Davis; Michelle D Tadmor; Erin F Simonds; Jacob H Levine; Sean C Bendall; Daniel K Shenfeld; Smita Krishnaswamy; Garry P Nolan; Dana Pe'er
Journal:  Nat Biotechnol       Date:  2013-05-19       Impact factor: 54.908

6.  Single cell profiling of potentiated phospho-protein networks in cancer cells.

Authors:  Jonathan M Irish; Randi Hovland; Peter O Krutzik; Omar D Perez; Øystein Bruserud; Bjørn T Gjertsen; Garry P Nolan
Journal:  Cell       Date:  2004-07-23       Impact factor: 41.582

7.  High-dimensional analysis of the murine myeloid cell system.

Authors:  Burkhard Becher; Andreas Schlitzer; Jinmiao Chen; Florian Mair; Hermi R Sumatoh; Karen Wei Weng Teng; Donovan Low; Christiane Ruedl; Paola Riccardi-Castagnoli; Michael Poidinger; Melanie Greter; Florent Ginhoux; Evan W Newell
Journal:  Nat Immunol       Date:  2014-10-12       Impact factor: 25.606

8.  Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.

Authors:  Peng Qiu; Erin F Simonds; Sean C Bendall; Kenneth D Gibbs; Robert V Bruggner; Michael D Linderman; Karen Sachs; Garry P Nolan; Sylvia K Plevritis
Journal:  Nat Biotechnol       Date:  2011-10-02       Impact factor: 54.908

9.  Bringing order to early B cell chaos.

Authors:  Heather L Van Epps
Journal:  J Exp Med       Date:  2006-06-12       Impact factor: 14.307

10.  Macrophage activation and polarization: nomenclature and experimental guidelines.

Authors:  Peter J Murray; Judith E Allen; Subhra K Biswas; Edward A Fisher; Derek W Gilroy; Sergij Goerdt; Siamon Gordon; John A Hamilton; Lionel B Ivashkiv; Toby Lawrence; Massimo Locati; Alberto Mantovani; Fernando O Martinez; Jean-Louis Mege; David M Mosser; Gioacchino Natoli; Jeroen P Saeij; Joachim L Schultze; Kari Ann Shirey; Antonio Sica; Jill Suttles; Irina Udalova; Jo A van Ginderachter; Stefanie N Vogel; Thomas A Wynn
Journal:  Immunity       Date:  2014-07-17       Impact factor: 31.745
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  21 in total

1.  Mass cytometry deep phenotyping of human mononuclear phagocytes and myeloid-derived suppressor cells from human blood and bone marrow.

Authors:  Mikael Roussel; P Brent Ferrell; Allison R Greenplate; Faustine Lhomme; Simon Le Gallou; Kirsten E Diggins; Douglas B Johnson; Jonathan M Irish
Journal:  J Leukoc Biol       Date:  2017-04-11       Impact factor: 4.962

2.  Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data.

Authors:  Kirsten E Diggins; P Brent Ferrell; Jonathan M Irish
Journal:  Methods       Date:  2015-05-13       Impact factor: 3.608

Review 3.  Computational flow cytometry: helping to make sense of high-dimensional immunology data.

Authors:  Yvan Saeys; Sofie Van Gassen; Bart N Lambrecht
Journal:  Nat Rev Immunol       Date:  2016-06-20       Impact factor: 53.106

Review 4.  Single-cell technologies in reproductive immunology.

Authors:  Jessica Vazquez; Irene M Ong; Aleksandar K Stanic
Journal:  Am J Reprod Immunol       Date:  2019-06-26       Impact factor: 3.886

5.  Computational Immune Monitoring Reveals Abnormal Double-Negative T Cells Present across Human Tumor Types.

Authors:  Allison R Greenplate; Daniel D McClanahan; Brian K Oberholtzer; Deon B Doxie; Caroline E Roe; Kirsten E Diggins; Nalin Leelatian; Megan L Rasmussen; Mark C Kelley; Vivian Gama; Peter J Siska; Jeffrey C Rathmell; P Brent Ferrell; Douglas B Johnson; Jonathan M Irish
Journal:  Cancer Immunol Res       Date:  2018-11-09       Impact factor: 11.151

6.  Preparing Viable Single Cells from Human Tissue and Tumors for Cytomic Analysis.

Authors:  Nalin Leelatian; Deon B Doxie; Allison R Greenplate; Justine Sinnaeve; Rebecca A Ihrie; Jonathan M Irish
Journal:  Curr Protoc Mol Biol       Date:  2017-04-03

Review 7.  Systems immune monitoring in cancer therapy.

Authors:  Allison R Greenplate; Douglas B Johnson; P Brent Ferrell; Jonathan M Irish
Journal:  Eur J Cancer       Date:  2016-05-04       Impact factor: 9.162

8.  Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling.

Authors:  June H Myklebust; Joshua Brody; Holbrook E Kohrt; Arne Kolstad; Debra K Czerwinski; Sébastien Wälchli; Michael R Green; Gunhild Trøen; Knut Liestøl; Klaus Beiske; Roch Houot; Jan Delabie; Ash A Alizadeh; Jonathan M Irish; Ronald Levy
Journal:  Blood       Date:  2016-12-23       Impact factor: 22.113

9.  Single cell analysis of human tissues and solid tumors with mass cytometry.

Authors:  Nalin Leelatian; Deon B Doxie; Allison R Greenplate; Bret C Mobley; Jonathan M Lehman; Justine Sinnaeve; Rondi M Kauffmann; Jay A Werkhaven; Akshitkumar M Mistry; Kyle D Weaver; Reid C Thompson; Pierre P Massion; Mary A Hooks; Mark C Kelley; Lola B Chambless; Rebecca A Ihrie; Jonathan M Irish
Journal:  Cytometry B Clin Cytom       Date:  2016-10-04       Impact factor: 3.058

10.  Multiparameter analysis of stimulated human peripheral blood mononuclear cells: A comparison of mass and fluorescence cytometry.

Authors:  Katherine J Nicholas; Allison R Greenplate; David K Flaherty; Brittany K Matlock; Juan San Juan; Rita M Smith; Jonathan M Irish; Spyros A Kalams
Journal:  Cytometry A       Date:  2015-11-24       Impact factor: 4.355
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