Literature DB >> 25386112

A droplet microfluidic approach to single-stream nucleic acid isolation and mutation detection.

Dong Jin Shin1, Yi Zhang1, Tza-Huei Wang2.   

Abstract

In this work, a droplet microfluidic platform for genetic mutation detection from crude biosample is described. Single-stream integration of nucleic acid isolation and amplification is realized on a simple fluidic cartridge. Subsequent DNA melting curve is employed with signal normalizing algorithm to differentiate heterozygous K-ras codon 12 c.25G>A mutant from the wildtype. This technique showcases an alternative to modular bench-top approaches for genetic mutation screening, which is of interest to decentralized diagnostic platforms.

Entities:  

Keywords:  Droplet PCR; Droplet microfluidics; Melting curve analysis; Mutation detection

Year:  2014        PMID: 25386112      PMCID: PMC4223799          DOI: 10.1007/s10404-013-1305-7

Source DB:  PubMed          Journal:  Microfluid Nanofluidics        ISSN: 1613-4982            Impact factor:   2.529


  21 in total

1.  On-chip manipulation of free droplets.

Authors:  Orlin D Velev; Brian G Prevo; Ketan H Bhatt
Journal:  Nature       Date:  2003-12-04       Impact factor: 49.962

Review 2.  High-resolution DNA melting analysis: advancements and limitations.

Authors:  Carl T Wittwer
Journal:  Hum Mutat       Date:  2009-06       Impact factor: 4.878

3.  Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications.

Authors:  Athanasios C Tsiatis; Alexis Norris-Kirby; Roy G Rich; Michael J Hafez; Christopher D Gocke; James R Eshleman; Kathleen M Murphy
Journal:  J Mol Diagn       Date:  2010-04-29       Impact factor: 5.568

4.  An integrated microfluidic device for influenza and other genetic analyses.

Authors:  R Pal; M Yang; R Lin; B N Johnson; N Srivastava; S Z Razzacki; K J Chomistek; D C Heldsinger; R M Haque; V M Ugaz; P K Thwar; Z Chen; K Alfano; M B Yim; M Krishnan; A O Fuller; R G Larson; D T Burke; M A Burns
Journal:  Lab Chip       Date:  2005-08-18       Impact factor: 6.799

5.  A fully integrated microfluidic genetic analysis system with sample-in-answer-out capability.

Authors:  Christopher J Easley; James M Karlinsey; Joan M Bienvenue; Lindsay A Legendre; Michael G Roper; Sanford H Feldman; Molly A Hughes; Erik L Hewlett; Tod J Merkel; Jerome P Ferrance; James P Landers
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

6.  Full-range magnetic manipulation of droplets via surface energy traps enables complex bioassays.

Authors:  Yi Zhang; Tza-Huei Wang
Journal:  Adv Mater       Date:  2013-03-26       Impact factor: 30.849

7.  Genotyping of single nucleotide polymorphisms by melting curve analysis using thin film semi-transparent heaters integrated in a lab-on-foil system.

Authors:  Anna Ohlander; Caterina Zilio; Tobias Hammerle; Sergey Zelenin; Gerhard Klink; Marcella Chiari; Karlheinz Bock; Aman Russom
Journal:  Lab Chip       Date:  2013-06-07       Impact factor: 6.799

8.  Mutations of BRAF and KRAS precede the development of ovarian serous borderline tumors.

Authors:  Chung-Liang Ho; Robert J Kurman; Reiko Dehari; Tian-Li Wang; Ie-Ming Shih
Journal:  Cancer Res       Date:  2004-10-01       Impact factor: 12.701

9.  A surface topography assisted droplet manipulation platform for biomarker detection and pathogen identification.

Authors:  Yi Zhang; Seungkyung Park; Kelvin Liu; Jennifer Tsuan; Samuel Yang; Tza-Huei Wang
Journal:  Lab Chip       Date:  2010-11-03       Impact factor: 6.799

10.  Catching bird flu in a droplet.

Authors:  Juergen Pipper; Masafumi Inoue; Lisa F-P Ng; Pavel Neuzil; Yi Zhang; Lukas Novak
Journal:  Nat Med       Date:  2007-09-23       Impact factor: 53.440

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  9 in total

Review 1.  Droplet microfluidics for high-sensitivity and high-throughput detection and screening of disease biomarkers.

Authors:  Aniruddha M Kaushik; Kuangwen Hsieh; Tza-Huei Wang
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2018-05-24

2.  Droplet Magnetofluidic Assay Platform for Quantitative Methylation-Specific PCR.

Authors:  Alejandro Stark; Alexander Trick; Thomas R Pisanic; Tza-Huei Wang
Journal:  Methods Mol Biol       Date:  2022

3.  A perspective on magnetic microfluidics: Towards an intelligent future.

Authors:  Yi Zhang; Aiwu Zhou; Songlin Chen; Guo Zhan Lum; Xiaosheng Zhang
Journal:  Biomicrofluidics       Date:  2022-01-18       Impact factor: 2.800

Review 4.  Efficient SNP Discovery by Combining Microarray and Lab-on-a-Chip Data for Animal Breeding and Selection.

Authors:  Chao-Wei Huang; Yu-Tsung Lin; Shih-Torng Ding; Ling-Ling Lo; Pei-Hwa Wang; En-Chung Lin; Fang-Wei Liu; Yen-Wen Lu
Journal:  Microarrays (Basel)       Date:  2015-11-16

Review 5.  Point-of-Care Sexually Transmitted Infection Diagnostics: Proceedings of the STAR Sexually Transmitted Infection-Clinical Trial Group Programmatic Meeting.

Authors:  Anthony D Cristillo; Claire C Bristow; Rosanna Peeling; Barbara Van Der Pol; Sasha Herbst de Cortina; Ivan K Dimov; Nitika Pant Pai; Dong Jin Shin; Ricky Y T Chiu; Catherine Klapperich; Purnima Madhivanan; Sheldon R Morris; Jeffrey D Klausner
Journal:  Sex Transm Dis       Date:  2017-04       Impact factor: 2.830

Review 6.  Towards Multiplex Molecular Diagnosis-A Review of Microfluidic Genomics Technologies.

Authors:  Ismail Hussain Kamal Basha; Eric Tatt Wei Ho; Caffiyar Mohamed Yousuff; Nor Hisham Bin Hamid
Journal:  Micromachines (Basel)       Date:  2017-08-30       Impact factor: 2.891

7.  A Portable Droplet Magnetofluidic Device for Point-of-Care Detection of Multidrug-Resistant Candida auris.

Authors:  Pei-Wei Lee; Marissa Totten; Liben Chen; Fan-En Chen; Alexander Y Trick; Kushagra Shah; Hoan Thanh Ngo; Mei Jin; Kuangwen Hsieh; Sean X Zhang; Tza-Huei Wang
Journal:  Front Bioeng Biotechnol       Date:  2022-03-24

8.  Rapid generation of chemical combinations on a magnetic digital microfluidic array.

Authors:  Yi Zhang; Tza-Huei Wang
Journal:  RSC Adv       Date:  2019-07-12       Impact factor: 4.036

9.  Facile Coupling of Droplet Magnetofluidic-Enabled Automated Sample Preparation for Digital Nucleic Acid Amplification Testing and Analysis.

Authors:  David E Gaddes; Pei-Wei Lee; Alexander Y Trick; Pornpat Athamanolap; Christine M O'Keefe; Chris Puleo; Kuangwen Hsieh; Tza-Huei Wang
Journal:  Anal Chem       Date:  2020-09-15       Impact factor: 8.008

  9 in total

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