Literature DB >> 25381363

Publication trends in model organism research.

Michael R Dietrich1, Rachel A Ankeny2, Patrick M Chen3.   

Abstract

In 1990, the National Institutes of Health (NIH) gave some organisms special status as designated model organisms. This article documents publication trends for these NIH-designated model organisms over the past 40 years. We find that being designated a model organism by the NIH does not guarantee an increasing publication trend. An analysis of model and nonmodel organisms included in GENETICS since 1960 does reveal a sharp decline in the number of publications using nonmodel organisms yet no decline in the overall species diversity. We suggest that organisms with successful publication records tend to share critical characteristics, such as being well developed as standardized, experimental systems and being used by well-organized communities with good networks of exchange and methods of communication.
Copyright © 2014 by the Genetics Society of America.

Mesh:

Year:  2014        PMID: 25381363      PMCID: PMC4224171          DOI: 10.1534/genetics.114.169714

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  19 in total

1.  The natural history of Caenorhabditis elegans research.

Authors:  R A Ankeny
Journal:  Nat Rev Genet       Date:  2001-06       Impact factor: 53.242

Review 2.  Headwaters of the zebrafish -- emergence of a new model vertebrate.

Authors:  David Jonah Grunwald; Judith S Eisen
Journal:  Nat Rev Genet       Date:  2002-09       Impact factor: 53.242

Review 3.  Taking stock of our models: the function and future of stock centres.

Authors:  Nadia Rosenthal; Michael Ashburner
Journal:  Nat Rev Genet       Date:  2002-09       Impact factor: 53.242

4.  Before there were standards: the role of test animals in the production of empirical generality in physiology.

Authors:  Cheryl A Logan
Journal:  J Hist Biol       Date:  2002       Impact factor: 1.326

5.  Re-thinking organisms: The impact of databases on model organism biology.

Authors:  Sabina Leonelli; Rachel A Ankeny
Journal:  Stud Hist Philos Biol Biomed Sci       Date:  2011-11-02

Review 6.  The future of evo-devo: model systems and evolutionary theory.

Authors:  Ralf J Sommer
Journal:  Nat Rev Genet       Date:  2009-06       Impact factor: 53.242

7.  How to learn new and interesting things from model systems based on "exotic" biological species.

Authors:  John M Sedivy
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-11       Impact factor: 11.205

8.  A series of normal stages in the development of the chick embryo.

Authors:  V HAMBURGER; H L HAMILTON
Journal:  J Morphol       Date:  1951-01       Impact factor: 1.804

Review 9.  Model systems in developmental biology.

Authors:  J A Bolker
Journal:  Bioessays       Date:  1995-05       Impact factor: 4.345

10.  Growing weed, producing knowledge: an epistemic history of Arabidopsis thaliana.

Authors:  Sabina Leonelli
Journal:  Hist Philos Life Sci       Date:  2007       Impact factor: 1.205

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  13 in total

1.  The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project.

Authors:  Kathryn Maxson Jones; Rachel A Ankeny; Robert Cook-Deegan
Journal:  J Hist Biol       Date:  2018-12       Impact factor: 1.326

2.  A Pre-clinical Standard Operating Procedure for Evaluating Orthobiologics in an In Vivo Rat Spinal Fusion Model.

Authors:  Andrew L Alejo; Scott McDermott; Yusuf Khalil; Hope C Ball; Gabrielle T Robinson; Ernesto Solorzano; Amanda M Alejo; Jacob Douglas; Trinity K Samson; Jesse W Young; Fayez F Safadi
Journal:  J Orthop Sports Med       Date:  2022-09-05

Review 3.  Field Guide to Plant Model Systems.

Authors:  Caren Chang; John L Bowman; Elliot M Meyerowitz
Journal:  Cell       Date:  2016-10-06       Impact factor: 41.582

4.  Mobilizing molluscan models and genomes in biology.

Authors:  Angus Davison; Maurine Neiman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-05       Impact factor: 6.671

Review 5.  Web resources for model organism studies.

Authors:  Bixia Tang; Yanqing Wang; Junwei Zhu; Wenming Zhao
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-02-20       Impact factor: 7.691

6.  A Bibliometric History of the Journal GENETICS.

Authors:  Natalie Telis; Benjamin V Lehmann; Marcus W Feldman; Jonathan K Pritchard
Journal:  Genetics       Date:  2016-12-07       Impact factor: 4.562

Review 7.  Translational Rodent Models for Research on Parasitic Protozoa-A Review of Confounders and Possibilities.

Authors:  Totta Ehret; Francesca Torelli; Christian Klotz; Amy B Pedersen; Frank Seeber
Journal:  Front Cell Infect Microbiol       Date:  2017-06-07       Impact factor: 5.293

8.  The challenges of big data biology.

Authors:  Sabina Leonelli
Journal:  Elife       Date:  2019-04-05       Impact factor: 8.140

9.  Model organism databases: essential resources that need the support of both funders and users.

Authors:  Stephen G Oliver; Antonia Lock; Midori A Harris; Paul Nurse; Valerie Wood
Journal:  BMC Biol       Date:  2016-06-22       Impact factor: 7.431

10.  Efficient depletion of ribosomal RNA for RNA sequencing in planarians.

Authors:  Iana V Kim; Eric J Ross; Sascha Dietrich; Kristina Döring; Alejandro Sánchez Alvarado; Claus-D Kuhn
Journal:  BMC Genomics       Date:  2019-11-29       Impact factor: 3.969

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