Literature DB >> 27716506

Field Guide to Plant Model Systems.

Caren Chang1, John L Bowman2, Elliot M Meyerowitz3.   

Abstract

For the past several decades, advances in plant development, physiology, cell biology, and genetics have relied heavily on the model (or reference) plant Arabidopsis thaliana. Arabidopsis resembles other plants, including crop plants, in many but by no means all respects. Study of Arabidopsis alone provides little information on the evolutionary history of plants, evolutionary differences between species, plants that survive in different environments, or plants that access nutrients and photosynthesize differently. Empowered by the availability of large-scale sequencing and new technologies for investigating gene function, many new plant models are being proposed and studied.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27716506      PMCID: PMC5068971          DOI: 10.1016/j.cell.2016.08.031

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  142 in total

Review 1.  A fortunate choice: the history of Arabidopsis as a model plant.

Authors:  Chris Somerville; Maarten Koornneef
Journal:  Nat Rev Genet       Date:  2002-11       Impact factor: 53.242

2.  KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants.

Authors:  Keiko Sakakibara; Sayuri Ando; Hoichong Karen Yip; Yosuke Tamada; Yuji Hiwatashi; Takashi Murata; Hironori Deguchi; Mitsuyasu Hasebe; John L Bowman
Journal:  Science       Date:  2013-03-01       Impact factor: 47.728

3.  Azolla domestication towards a biobased economy?

Authors:  Paul Brouwer; Andrea Bräutigam; Canan Külahoglu; Anne O E Tazelaar; Samantha Kurz; Klaas G J Nierop; Adrie van der Werf; Andreas P M Weber; Henriette Schluepmann
Journal:  New Phytol       Date:  2014-02-04       Impact factor: 10.151

Review 4.  Transformation of rice mediated by Agrobacterium tumefaciens.

Authors:  Y Hiei; T Komari; T Kubo
Journal:  Plant Mol Biol       Date:  1997-09       Impact factor: 4.076

Review 5.  The Evolutionary Origin of a Terrestrial Flora.

Authors:  Charles Francis Delwiche; Endymion Dante Cooper
Journal:  Curr Biol       Date:  2015-10-05       Impact factor: 10.834

6.  Setaria viridis: a model for C4 photosynthesis.

Authors:  Thomas P Brutnell; Lin Wang; Kerry Swartwood; Alexander Goldschmidt; David Jackson; Xin-Guang Zhu; Elizabeth Kellogg; Joyce Van Eck
Journal:  Plant Cell       Date:  2010-08-06       Impact factor: 11.277

7.  Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.

Authors:  Kankshita Swaminathan; Magdy S Alabady; Kranthi Varala; Emanuele De Paoli; Isaac Ho; Dan S Rokhsar; Aru K Arumuganathan; Ray Ming; Pamela J Green; Blake C Meyers; Stephen P Moose; Matthew E Hudson
Journal:  Genome Biol       Date:  2010-02-03       Impact factor: 13.583

8.  An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

Authors:  Haibao Tang; Vivek Krishnakumar; Shelby Bidwell; Benjamin Rosen; Agnes Chan; Shiguo Zhou; Laurent Gentzbittel; Kevin L Childs; Mark Yandell; Heidrun Gundlach; Klaus F X Mayer; David C Schwartz; Christopher D Town
Journal:  BMC Genomics       Date:  2014-04-27       Impact factor: 3.969

Review 9.  Improving crop disease resistance: lessons from research on Arabidopsis and tomato.

Authors:  Sophie J M Piquerez; Sarah E Harvey; Jim L Beynon; Vardis Ntoukakis
Journal:  Front Plant Sci       Date:  2014-12-03       Impact factor: 5.753

10.  Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa.

Authors:  Jesse D Hollister; Brian J Arnold; Elisabeth Svedin; Katherine S Xue; Brian P Dilkes; Kirsten Bomblies
Journal:  PLoS Genet       Date:  2012-12-20       Impact factor: 5.917

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  25 in total

Review 1.  Floral Organogenesis: When Knowing Your ABCs Is Not Enough.

Authors:  Bennett Thomson; Beibei Zheng; Frank Wellmer
Journal:  Plant Physiol       Date:  2016-10-27       Impact factor: 8.340

Review 2.  Mulberry (Morus spp.) has the features to treat as a potential perennial model system.

Authors:  K H Dhanyalakshmi; K N Nataraja
Journal:  Plant Signal Behav       Date:  2018-07-26

Review 3.  Plant science's next top models.

Authors:  Igor Cesarino; Raffaele Dello Ioio; Gwendolyn K Kirschner; Michael S Ogden; Kelsey L Picard; Madlen I Rast-Somssich; Marc Somssich
Journal:  Ann Bot       Date:  2020-06-19       Impact factor: 4.357

4.  Euphyllophyte Paleoviruses Illuminate Hidden Diversity and Macroevolutionary Mode of Caulimoviridae.

Authors:  Zhen Gong; Guan-Zhu Han
Journal:  J Virol       Date:  2018-04-27       Impact factor: 5.103

5.  The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences.

Authors:  Yuhan Fang; Xing Qin; Qinggang Liao; Ran Du; Xizhi Luo; Qian Zhou; Zhen Li; Hengchi Chen; Wanting Jin; Yaning Yuan; Pengbo Sun; Rui Zhang; Jiao Zhang; Li Wang; Shifeng Cheng; Xueyong Yang; Yuehong Yan; Xingtan Zhang; Zhonghua Zhang; Shunong Bai; Yves Van de Peer; William John Lucas; Sanwen Huang; Jianbin Yan
Journal:  Nat Plants       Date:  2022-09-01       Impact factor: 17.352

Review 6.  Plant Transglutaminases: New Insights in Biochemistry, Genetics, and Physiology.

Authors:  Luigi Parrotta; Umesh Kumar Tanwar; Iris Aloisi; Ewa Sobieszczuk-Nowicka; Magdalena Arasimowicz-Jelonek; Stefano Del Duca
Journal:  Cells       Date:  2022-05-03       Impact factor: 7.666

7.  Genome-wide study of flowering-related MADS-box genes family in Cardamine hirsuta.

Authors:  Mahmood Ghorbani Marghashi; Hedayat Bagheri; Mansour Gholami
Journal:  3 Biotech       Date:  2020-11-09       Impact factor: 2.406

8.  Evolution of circadian clocks along the green lineage.

Authors:  Jan Petersen; Anxhela Rredhi; Julie Szyttenholm; Maria Mittag
Journal:  Plant Physiol       Date:  2022-09-28       Impact factor: 8.005

9.  Gene Duplication Leads to Altered Membrane Topology of a Cytochrome P450 Enzyme in Seed Plants.

Authors:  Hugues Renault; Minttu De Marothy; Gabriella Jonasson; Patricia Lara; David R Nelson; IngMarie Nilsson; François André; Gunnar von Heijne; Danièle Werck-Reichhart
Journal:  Mol Biol Evol       Date:  2017-08-01       Impact factor: 16.240

10.  Research priorities for harnessing plant microbiomes in sustainable agriculture.

Authors:  Posy E Busby; Chinmay Soman; Maggie R Wagner; Maren L Friesen; James Kremer; Alison Bennett; Mustafa Morsy; Jonathan A Eisen; Jan E Leach; Jeffery L Dangl
Journal:  PLoS Biol       Date:  2017-03-28       Impact factor: 8.029

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