| Literature DB >> 25373209 |
Bamphitlhi Tiroesele1, Steven R Skoda2, Thomas E Hunt3, Donald J Lee4, Jaime Molina-Ochoa5, John E Foster6.
Abstract
Bean leaf beetle, Cerotoma trifurcata (Forster) (Coleoptera: Chrysomelidae), is a common pest of soybean in the Midwest United States. However, there are currently no reports on the genetic variability of C. trifurcata. This study examined 15-30 individuals from 25 sample locations to estimate genetic variability and gene flow within and among C. trifurcata from across the Mid- west. Amplified fragment length polymorphism generated 175 markers for analyses. Results from analysis of molecular variance (AMOVA) indicated that the majority of genetic variation was from within samples; only a small amount of the total variation was attributed to the variation among the samples. The GST for the entire C. trifurcata population indicated that the majority of genetic variation was found within the samples, further supporting the AMOVA results. The estimated average gene flow among the C. trifurcata samples was 1.83. The Mantel test revealed no indication of correlation between geographical and genetic distance for all the C. trifurcata samples. These findings show that C. trifurcata in the Midwest are genetically heterogeneous and part of a large, interbreeding population. This is an open access paper. We use the Creative Commons Attribution 3.0 license that permits unrestricted use, provided that the paper is properly attributed.Entities:
Keywords: AFLP; genetic distance; geographic distance; soybean pests
Mesh:
Year: 2014 PMID: 25373209 PMCID: PMC4207508 DOI: 10.1093/jis/14.1.62
Source DB: PubMed Journal: J Insect Sci ISSN: 1536-2442 Impact factor: 1.857
Figure 1.Sampling sites of Midwest (USA) Cerotoma trifurcata subpopulations used in this study. *1-Brookings, 2-Becker, 3- Lamberton, 4-Sutherland, 5-Ames, 6-Lewis, 7-Chariton, 8-Concord, 9-Ithaca (Mead), 10-Lincoln, 11-Clay Center, 12-Manhattan, 13- Columbia, 14-Pemiscot, 15-Savoy, 16-Logan, 17-Waverly, 18-Richland, 19-Hancock, 20-Hoytville, 21-Pemberville. High quality figures are available online.
Code, collection site, collector, and date of collection of adult samples of Cerotoma trifurcata .
The sequences of oligonucleotide adapters, and primers used for AFLP analysis of Cerotoma trifurcata .
Selective AFLP primer combinations, number of markers, and fragment size for the primer pair combinations for Cerotoma trifurcata study.
Genetic diversity estimates for all Cerotoma trifurcata subpopulations : number of polymorphic loci, percent loci polymorphism, heterozygosity (genetic variation) for a subpopulation (HS), heterozygosity for all C. trifurcata subpopulations (HT), gene flow among all subpopulations (Nm) and genetic variation between subpopulations (Gst).
Figure 2.Genetic (dissimilarity) and geographic distance correlation among the Cerotoma trifurcata subpopulations sampled from western-Midwest USA (Nebraska), southern-Midwest USA (Missouri and Kansas), northern-Midwest USA (Minnesota and South Dakota), central-Midwest USA (Iowa), and eastern-Midwest USA (Ohio and Illinois). High quality figures are available online.
Analysis of molecular variance (AMOVA) for 25 subpopulations of Cerotoma trifurcata collected from five different regions of the Midwestern USA (North, South, East, West, and Central).
Figure 3.Dendogram illustrating the relationships among all the 25 Cerotoma trifurcata subpopulations collected from the Midwest USA, and an out group population of fall armyworm (FAW) collected from Iowa. Bootstrap values, when > 50%, are given at each of the forks (1000 replicates). High quality figures are available online.