| Literature DB >> 29718501 |
Bamphitlhi Tiroesele1, Steven R Skoda2, Thomas E Hunt3, Donald J Lee4, Muhammad Irfan Ullah5, Jaime Molina-Ochoa6, John E Foster7.
Abstract
Bean leaf beetle (BLB), Cerotoma trifurcata (Forster; Coleoptera: Chrysomelidae), exhibits considerable color variation but little is known about the underlying genetic structure and gene flow among color phenotypes. Genetic and morphological variation among four color phenotypes-green with spots (G+S), green without spots (G-S), red with spots (R+S) and red without spots (R-S)-were analyzed using amplified fragment length polymorphisms (AFLP) and morphometrics, respectively. AFLP generated 175 markers that showed ≥80% polymorphism. Analysis of molecular variance (AMOVA) indicated that genetic variation was greatest within phenotypes (82.6-84.0%); gene flow among the four phenotypes was relatively high (Nm = 3.82). The dendrogram and STRUCTURE analysis indicated some population divergence of G-S from the other phenotypes. Morphological parameters were similar among phenotypes except that R+S showed significant differences in weight and body-length. Canonical variables 1 and 2, based on average morphometric characters, accounted for 98% of the total variation; some divergence was indicated between G+S and R+S from each other and from the G-S/R-S BLB color morphs. The pattern of genetic variation indicated potential divergence of G-S and G+S from each other and from R-S and R+S. Although these results indicate that the four different color morphs are not genetically or reproductively isolated, there is some genetic differentiation/structure and morphological dissimilarity suggesting weak/incomplete isolation.Entities:
Mesh:
Year: 2018 PMID: 29718501 PMCID: PMC5890489 DOI: 10.1093/jisesa/iey016
Source DB: PubMed Journal: J Insect Sci ISSN: 1536-2442 Impact factor: 1.857
Fig. 1.Examples of bean leaf beetle phenotypes in this study: (A) red with spots; (B) green with spots; (C) red without spots; and (D) green without spots (photo found on the web at https://www.bing.com/images/search?view=detailV2&ccid=B1AZHJvT&id=C83FC6441B4418CB1973DBA6EEADA8F20541B594&thid=OIP.B1AZHJvTh7UIEy1L4gC3jAHaJZ&mediaurl=https%3a%2f%2fwww.vegedge.umn.edu%2fsites%2fvegedge.umn.edu%2ffiles%2fstyles%2fpanopoly_ image_original%2fpublic%2fmorphbg.jpg%3fitok%3d3pglrAIQ&exph=548&expw=432&q=bean+leaf+beetle+pictures&simid=608015028718276108& selectedIndex=25&qpvt=bean+leaf+beetle+pictures).
The sequences of oligonucleotide adapters and primers used for AFLP analysis
| Primer ID | Primer Type | Sequence (5′-3′) | AFLP STEP |
|---|---|---|---|
|
| Forward adapter | CTCGTAGACTGCGTACC | Adapter Ligation |
|
| Reverse adapter | AATTGGTACGCAGTCTAC | Adapter Ligation |
|
| Forward adapter | GACGATGAGTCCTGAG | Adapter Ligation |
|
| Reverse adapter | TACTCAGGACTCAT | Adapter Ligation |
| E(N+0) |
| GACTGCGTACCAATTC | Preamplification |
| M(N+1) |
| GATGAGTCCTGAGTAA | Preamplification |
Selective AFLP primer combinations, number of markers, fragment size and percentage mismatch for the primer pair combinations used with bean leaf beetle color morphs
| Primer combination | Number of markers | Fragment size range (bp) | % Mismatch |
|---|---|---|---|
| M-AA × E-ACA | 74 | 50–400 | 6.17 |
| M-AG × E-AAC | 47 | 50–400 | 5.50 |
| M-AG × E-ACA | 54 | 50–370 | 5.89 |
| Total | 175 | ||
| Average | 5.85 |
M, MseI preamplification primer plus 2 bases added to 3′ end; E, EcoRI preamplification primer plus 3 bases added to 3′ end.
Morphological variables and mean (±SE) measurements for the comparison of the four bean leaf beetle color morphs
| Mean ± SE | ||||
|---|---|---|---|---|
| Variables (mm) | G+S | G-S | R+S | R-S |
| Weight (g) | 0.015 ± 0.001ab | 0.013 ± 0.001b | 0.018 ± 0.001a | 0.011 ± 0.002b |
| Head size | 1.16 ± 0.01 | 1.15 ± 0.01 | 1.16 ± 0.01 | 1.14 ± 0.01 |
| Body length | 5.41 ± 0.03b | 5.27 ± 0.04b | 5.53 ± 0.04a | 5.25 ± 0.05b |
| Elytra length | 4.15 ± 0.02a | 3.93 ± 0.02b | 4.20 ± 0.03a | 4.01 ± 0.03b |
| Elytra width | 1.71 ± 0.01 | 1.70 ± 0.01 | 1.73 ± 0.01 | 1.69 ± 0.02 |
| Scutellum length | 1.12 ± 0.01 | 1.09 ± 0.01 | 1.08 ± 0.02 | 1.11 ± 0.02 |
| Abdomen length | 3.06 ± 0.02 | 3.07 ± 0.02 | 3.11 ± 0.02 | 3.10 ± 0.03 |
| Antennae length | 3.25 ± 0.02 | 3.21 ± 0.03 | 3.27 ± 0.02 | 3.20 ± 0.02 |
| Tibia length | 1.90 ± 0.01 | 1.87 ± 0.02 | 1.88 ± 0.02 | 1.90 ± 0.02 |
| Femur length | 2.00 ± 0.01 | 1.97 ± 0.01 | 1.99 ± 0.02 | 1.96 ± 0.02 |
| Pronotum length | 0.99 ± 0.01 | 0.98 ± 0.01 | 1.00 ± 0.01 | 0.98 ± 0.01 |
| Pronotum width | 1.61 ± 0.01 | 1.60 ± 0.01 | 1.62 ± 0.01 | 1.59 ± 0.01 |
Means within a row followed by different letters were significantly different (P ≤ 0.05; ANOVA; Least Significant Difference).
G+S = green adult beetles with black spots on elytra, G-S = green adult beetles with no black spots on elytra, R+S = red adult beetles with black spots on elytra), R-S = red adult beetles with no black spots on elytra.
Results from Canonical discriminant analysis (SAS Institute 2006) used with the morphological measurements on bean leaf beetle color morphs
| Canonical variable | Canonical correlation | Adjusted canonical correlation | Eigen value | Proportion | Cumulative |
|
|---|---|---|---|---|---|---|
| 1 | 0.304109 | 0.25934 | 3.9897 | 0.6934 | 0.6934 | 15.2 (<0.001) |
| 2 | 0.313505 | 0.25732 | 1.6300 | 0.2833 | 0.9767 | 8.3 (<0.001) |
| 3 | 0.1339 | 0.0233 | 1 | 1.7 (0.10) |
Fig. 2.Plot of the canonical variables 1 and 2 of four bean leaf beetle color morphs from Pemiscot County, MO. 1 = Green with spots; 2 = Green without spots; 3 = Red with spots; 4 = Red without spots.
Canonical structure and standardized canonical coefficients of canonical variables 1 (Can1) and 2 (Can 2) for morphological measurements on bean leaf beetle color morphs
| Variable | Pooled within canonical structure | Pooled within-class standardized canonical coefficients | ||
|---|---|---|---|---|
| Can 1 | Can 2 | Can 1 | Can 2 | |
| Weight | 0.162137 | 0.271978 | 0.277355 | 0.23652 |
| Body length | 0.203074 | 0.344169 | 0.271995 | −0.04973 |
| Head width | −0.200912 | 0.503752 | −0.38350 | 0.37180 |
| Scutellum length | −0.141496 | 0.032343 | −0.39387 | −0.26737 |
| Pronotum length | 0.599914 | 0.078336 | 0.734047 | −0.08939 |
| Pronotum width | −0.098524 | 0.555989 | −0.02995 | 0.25443 |
| Elytra length | 0.151265 | 0.661698 | 0.018214 | 0.56472 |
| Elytra width | 0.168595 | 0.499501 | 0.298572 | 0.28117 |
| Femur length | −0.363390 | 0.336532 | −0.39370 | 0.20046 |
| Tibia length | 0.249865 | 0.253615 | −0.17966 | 0.07445 |
| Abdomen length | 0.104168 | −0.074302 | −0.05800 | −0.54377 |
| Antennae length | −0.356031 | −0.039952 | −0.21514 | 0.03005 |
Genetic diversity estimates for the four color morph samples of bean leaf beetle from Pemiscot-MO: Number of polymorphic loci, percent loci polymorphism, heterozygosity (genetic variation) for a single color morph (HS), heterozygosity for all the BLB color morph samples (HT), gene flow among color morph samples (Nm), and genetic variation between color morph samples (GST)
| Color samples | No. of polymorphic loci | % Polymorphism | HS | HT | GST | Nm |
|---|---|---|---|---|---|---|
| G+S | 163 | 93.14 | 0.4055 ± 0.1334 | |||
| G-S | 140 | 80.00 | 0.3484 ± 0.1855 | |||
| R+S | 162 | 92.57 | 0.4229 ± 0.1348 | |||
| R-S | 164 | 93.71 | 0.4125 ± 0.1282 | |||
| Average | 143.76 | 82.1488 | 0.4493 ± 0.0046 | 0.3973 | 0.1156 | 3.8244 |
Fig. 3.Graphic results from structure analyses exploring if samples of four phenotypes of bean leaf beetles (BLB) represent two populations (A), three populations (B) or four populations (C): the green without spots (G-S) BLB display considerable genetic divergence from the other phenotypes (panels B and C); the green with spots (G+S) may also be diverging (panel C); divergence is not detected within the two red (R-S and R+S) BLB morphs.
Analysis of molecular variance for four different color morphs of bean leaf beetle sampled from Pemiscot, MO, based on results from the program STRUCTURE, with three groups; red (with and without spots), green with spots, and green without spots
| Source of variation, | df | Sum of squares | Variance components | Percentage of variation |
|---|---|---|---|---|
| Among groups | 2 | 245.39 | 3.322 Va | 12.64 |
| Among color samples | 1 | 41.66 | 1.246 Vb | 4.74 |
| Within color samples | 68 | 1476.70 | 21.716 Vc | 82.62 |
| Total | 71 | 1763.75 | 26.284 | |
| Fixation indices | ||||
|
| 0.174 |
| ||
|
| 0.054 |
| ||
|
| 0.126 |
| ||
F ST, calculated by permuting haplotypes among populations among groups, indicates the variance among subpopulations relative to total variance of the population; FSC, calculated by permuting haplotypes within populations among groups, indicates the variance among subpopulations within groups; FCT, calculated by permuting populations among groups, indicates the variance among groups relative to the total variance of the population.
Fig. 4.UPGMA dendrogram illustrating the relationships among the four bean leaf beetle color morphs sampled from Pemiscot County, MO; fall armyworm (FAW) was the out-group. Bootstrap values are given at each of the forks (>50%, 1,000 replicates). R-S, Red without spots; R+S, Red with spots; G-S, Green without spots; G+S, Green with spots.