Literature DB >> 16304600

Genotyping errors: causes, consequences and solutions.

François Pompanon1, Aurélie Bonin, Eva Bellemain, Pierre Taberlet.   

Abstract

Although genotyping errors affect most data and can markedly influence the biological conclusions of a study, they are too often neglected. Errors have various causes, but their occurrence and effect can be limited by considering these causes in the production and analysis of the data. Procedures that have been developed for dealing with errors in linkage studies, forensic analyses and non-invasive genotyping should be applied more broadly to any genetic study. We propose a protocol for estimating error rates and recommend that these measures be systemically reported to attest the reliability of published genotyping studies.

Mesh:

Year:  2005        PMID: 16304600     DOI: 10.1038/nrg1707

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  240 in total

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Authors:  J S Ellis; J Gilbey; A Armstrong; T Balstad; E Cauwelier; C Cherbonnel; S Consuegra; J Coughlan; T F Cross; W Crozier; E Dillane; D Ensing; C García de Leániz; E García-Vázquez; A M Griffiths; K Hindar; S Hjorleifsdottir; D Knox; G Machado-Schiaffino; P McGinnity; D Meldrup; E E Nielsen; K Olafsson; C R Primmer; P Prodohl; L Stradmeyer; J-P Vähä; E Verspoor; V Wennevik; J R Stevens
Journal:  Genetica       Date:  2011-02-01       Impact factor: 1.082

2.  Family-based association tests using genotype data with uncertainty.

Authors:  Zhaoxia Yu
Journal:  Biostatistics       Date:  2011-12-08       Impact factor: 5.899

3.  Computationally efficient sibship and parentage assignment from multilocus marker data.

Authors:  Jinliang Wang
Journal:  Genetics       Date:  2012-02-23       Impact factor: 4.562

4.  A quality control algorithm for filtering SNPs in genome-wide association studies.

Authors:  Monnat Pongpanich; Patrick F Sullivan; Jung-Ying Tzeng
Journal:  Bioinformatics       Date:  2010-05-25       Impact factor: 6.937

Review 5.  Longevity of clonal plants: why it matters and how to measure it.

Authors:  Lucienne C de Witte; Jürg Stöcklin
Journal:  Ann Bot       Date:  2010-09-29       Impact factor: 4.357

Review 6.  Applying evolutionary genetics to schistosome epidemiology.

Authors:  Michelle L Steinauer; Michael S Blouin; Charles D Criscione
Journal:  Infect Genet Evol       Date:  2010-02-20       Impact factor: 3.342

7.  Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data.

Authors:  Paul C D Johnson; Daniel T Haydon
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

8.  Robustness of single-base extension against mismatches at the site of primer attachment in a clinical assay.

Authors:  Holger Kirsten; Daniel Teupser; Jana Weissfuss; Grit Wolfram; Frank Emmrich; Peter Ahnert
Journal:  J Mol Med (Berl)       Date:  2006-12-08       Impact factor: 4.599

9.  Surviving with low genetic diversity: the case of albatrosses.

Authors:  Emmanuel Milot; Henri Weimerskirch; Pierre Duchesne; Louis Bernatchez
Journal:  Proc Biol Sci       Date:  2007-03-22       Impact factor: 5.349

10.  Genotyping error detection in samples of unrelated individuals without replicate genotyping.

Authors:  Nianjun Liu; Dabao Zhang; Hongyu Zhao
Journal:  Hum Hered       Date:  2008-12-15       Impact factor: 0.444

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