Literature DB >> 25372820

Overproduction, crystallization and preliminary X-ray crystallographic analysis of Escherichia coli tRNA N6-threonylcarbamoyladenosine dehydratase.

Sunmin Kim1, Keon Young Kim1, Jeong Kuk Park1, Byung Il Lee2, Yun-Gon Kim3, SangYoun Park1.   

Abstract

Escherichia coli tRNA N6-threonylcarbamoyladenosine dehydratase (TcdA), previously called CsdL or YgdL, was overproduced and purified from E. coli and crystallized using polyethylene glycol 3350 as a crystallizing agent. X-ray diffraction data were collected to 2.70 Å resolution under cryoconditions using synchrotron X-rays. The crystals belonged to space group P2₁, with unit-cell parameters a=65.4, b=96.8, c=83.3 Å, β=111.7°. According to the Matthews coefficient, the asymmetric unit may contain up to four subunits of the monomeric protein, with a crystal volume per protein mass (VM) of 2.12 Å3 Da(-1) and 42.1% solvent content.

Entities:  

Keywords:  CsdL; N6-threonylcarbamoyladenosine dehydratase; TcdA; tRNA hypermodification

Mesh:

Substances:

Year:  2014        PMID: 25372820      PMCID: PMC4231855          DOI: 10.1107/S2053230X14020883

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  12 in total

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6.  Aminoacyl nucleosides. VII. N-(Purin-6-ylcarbamoyl)threonine. A new component of transfer ribonucleic acid.

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Journal:  Biochemistry       Date:  1969-08       Impact factor: 3.162

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Structural analysis of Escherichia coli ThiF.

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10.  A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

Authors:  Kenjyo Miyauchi; Satoshi Kimura; Tsutomu Suzuki
Journal:  Nat Chem Biol       Date:  2012-12-16       Impact factor: 15.040

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  2 in total

1.  The crystal structure and small-angle X-ray analysis of CsdL/TcdA reveal a new tRNA binding motif in the MoeB/E1 superfamily.

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Review 2.  Diverse Mechanisms of Sulfur Decoration in Bacterial tRNA and Their Cellular Functions.

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  2 in total

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