Literature DB >> 15558052

The role of modifications in codon discrimination by tRNA(Lys)UUU.

Frank V Murphy1, Venki Ramakrishnan, Andrzej Malkiewicz, Paul F Agris.   

Abstract

The natural modification of specific nucleosides in many tRNAs is essential during decoding of mRNA by the ribosome. For example, tRNA(Lys)(UUU) requires the modification N6-threonylcarbamoyladenosine at position 37 (t(6)A37), adjacent and 3' to the anticodon, to bind AAA in the A site of the ribosomal 30S subunit. Moreover, it can only bind both AAA and AAG lysine codons when doubly modified with t(6)A37 and either 5-methylaminomethyluridine or 2-thiouridine at the wobble position (mnm(5)U34 or s(2)U34). Here we report crystal structures of modified tRNA anticodon stem-loops bound to the 30S ribosomal subunit with lysine codons in the A site. These structures allow the rationalization of how modifications in the anticodon loop enable decoding of both lysine codons AAA and AAG.

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Year:  2004        PMID: 15558052     DOI: 10.1038/nsmb861

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  163 in total

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3.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

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5.  C5-substituents of uridines and 2-thiouridines present at the wobble position of tRNA determine the formation of their keto-enol or zwitterionic forms - a factor important for accuracy of reading of guanosine at the 3΄-end of the mRNA codons.

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6.  Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1.

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7.  Identification of the enzyme responsible for N1-methylation of pseudouridine 54 in archaeal tRNAs.

Authors:  Jan Philip Wurm; Marco Griese; Ute Bahr; Martin Held; Alexander Heckel; Michael Karas; Jörg Soppa; Jens Wöhnert
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8.  Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons.

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Journal:  RNA       Date:  2012-01-26       Impact factor: 4.942

Review 9.  Fidelity at the molecular level: lessons from protein synthesis.

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Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability-Due to increased missense errors?

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Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

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