Literature DB >> 25362066

X-ray structure of the amidase domain of AtzF, the allophanate hydrolase from the cyanuric acid-mineralizing multienzyme complex.

Sahil Balotra1, Janet Newman2, Nathan P Cowieson3, Nigel G French4, Peter M Campbell4, Lyndall J Briggs4, Andrew C Warden4, Christopher J Easton5, Thomas S Peat2, Colin Scott6.   

Abstract

The activity of the allophanate hydrolase from Pseudomonas sp. strain ADP, AtzF, provides the final hydrolytic step for the mineralization of s-triazines, such as atrazine and cyanuric acid. Indeed, the action of AtzF provides metabolic access to two of the three nitrogens in each triazine ring. The X-ray structure of the N-terminal amidase domain of AtzF reveals that it is highly homologous to allophanate hydrolases involved in a different catabolic process in other organisms (i.e., the mineralization of urea). The smaller C-terminal domain does not appear to have a physiologically relevant catalytic function, as reported for the allophanate hydrolase of Kluyveromyces lactis, when purified enzyme was tested in vitro. However, the C-terminal domain does have a function in coordinating the quaternary structure of AtzF. Interestingly, we also show that AtzF forms a large, ca. 660-kDa, multienzyme complex with AtzD and AtzE that is capable of mineralizing cyanuric acid. The function of this complex may be to channel substrates from one active site to the next, effectively protecting unstable metabolites, such as allophanate, from solvent-mediated decarboxylation to a dead-end metabolic product.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 25362066      PMCID: PMC4277574          DOI: 10.1128/AEM.02783-14

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  48 in total

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Journal:  J Biol Chem       Date:  2013-06-10       Impact factor: 5.157

4.  Defining sequence space and reaction products within the cyanuric acid hydrolase (AtzD)/barbiturase protein family.

Authors:  Jennifer L Seffernick; Jasmine S Erickson; Stephan M Cameron; Seunghee Cho; Anthony G Dodge; Jack E Richman; Michael J Sadowsky; Lawrence P Wackett
Journal:  J Bacteriol       Date:  2012-06-22       Impact factor: 3.490

5.  Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization.

Authors:  M L de Souza; M J Sadowsky; L P Wackett
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

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Review 8.  Evolution of atrazine-degrading capabilities in the environment.

Authors:  Nikolina Udiković-Kolić; Colin Scott; Fabrice Martin-Laurent
Journal:  Appl Microbiol Biotechnol       Date:  2012-10-18       Impact factor: 4.813

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Journal:  Biochemistry       Date:  2013-01-18       Impact factor: 3.162

10.  Crystallization and preliminary X-ray diffraction analysis of the amidase domain of allophanate hydrolase from Pseudomonas sp. strain ADP.

Authors:  Sahil Balotra; Janet Newman; Nigel G French; Lyndall J Briggs; Thomas S Peat; Colin Scott
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-02-19       Impact factor: 1.056

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  12 in total

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Review 2.  Ancient Evolution and Recent Evolution Converge for the Biodegradation of Cyanuric Acid and Related Triazines.

Authors:  Jennifer L Seffernick; Lawrence P Wackett
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

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4.  High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes.

Authors:  Thomas S Peat; Sahil Balotra; Matthew Wilding; Carol J Hartley; Janet Newman; Colin Scott
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5.  X-Ray Structure and Mutagenesis Studies of the N-Isopropylammelide Isopropylaminohydrolase, AtzC.

Authors:  Sahil Balotra; Andrew C Warden; Janet Newman; Lyndall J Briggs; Colin Scott; Thomas S Peat
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7.  Structural and biochemical characterization of the biuret hydrolase (BiuH) from the cyanuric acid catabolism pathway of Rhizobium leguminasorum bv. viciae 3841.

Authors:  Lygie Esquirol; Thomas S Peat; Matthew Wilding; Del Lucent; Nigel G French; Carol J Hartley; Janet Newman; Colin Scott
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8.  A novel decarboxylating amidohydrolase involved in avoiding metabolic dead ends during cyanuric acid catabolism in Pseudomonas sp. strain ADP.

Authors:  Lygie Esquirol; Thomas S Peat; Matthew Wilding; Carol J Hartley; Janet Newman; Colin Scott
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10.  The structure of the hexameric atrazine chlorohydrolase AtzA.

Authors:  T S Peat; J Newman; S Balotra; D Lucent; A C Warden; C Scott
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-02-26
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