Literature DB >> 25360363

Optical projection tomography as a tool for 3D imaging of hydrogels.

Edite Figueiras1, Ana M Soto1, Danilo Jesus1, M Lehti1, J Koivisto2, J E Parraga1, J Silva-Correia3, J M Oliveira3, R L Reis3, M Kellomäki1, J Hyttinen1.   

Abstract

An Optical Projection Tomography (OPT) system was developed and optimized to image 3D tissue engineered products based in hydrogels. We develop pre-reconstruction algorithms to get the best result from the reconstruction procedure, which include correction of the illumination and determination of sample center of rotation (CoR). Existing methods for CoR determination based on the detection of the maximum variance of reconstructed slices failed, so we develop a new CoR search method based in the detection of the variance sharpest local maximum. We show the capabilities of the system to give quantitative information of different types of hydrogels that may be useful in its characterization.

Keywords:  (100.6890) Three-dimensional image processing; (100.6950) Tomographic image processing; (160.1435) Biomaterials; (170.3010) Image reconstruction techniques

Year:  2014        PMID: 25360363      PMCID: PMC4206315          DOI: 10.1364/BOE.5.003443

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  10 in total

1.  Optical transillumination tomography with tolerance against refraction mismatch.

Authors:  Mark A Haidekker
Journal:  Comput Methods Programs Biomed       Date:  2005-10-27       Impact factor: 5.428

2.  Correction of artefacts in optical projection tomography.

Authors:  Johnathon R Walls; John G Sled; James Sharpe; R Mark Henkelman
Journal:  Phys Med Biol       Date:  2005-09-21       Impact factor: 3.609

Review 3.  Optical projection tomography as a new tool for studying embryo anatomy.

Authors:  James Sharpe
Journal:  J Anat       Date:  2003-02       Impact factor: 2.610

Review 4.  Meeting the needs of monitoring in tissue engineering.

Authors:  Melissa L Mather; Stephen P Morgan; John A Crowe
Journal:  Regen Med       Date:  2007-03       Impact factor: 3.806

5.  Improved reconstructions and generalized filtered back projection for optical projection tomography.

Authors:  Udo Jochen Birk; Alex Darrell; Nikos Konstantinides; Ana Sarasa-Renedo; Jorge Ripoll
Journal:  Appl Opt       Date:  2011-02-01       Impact factor: 1.980

6.  Automated recovery of the center of rotation in optical projection tomography in the presence of scattering.

Authors:  Di Dong; Shouping Zhu; Chenghu Qin; V Kumar; J V Stein; S Oehler; C Savakis; Jie Tian; J Ripoll
Journal:  IEEE J Biomed Health Inform       Date:  2012-09-19       Impact factor: 5.772

Review 7.  Thinking inside the box: keeping tissue-engineered constructs in vitro for use as preclinical models.

Authors:  Michael C Gibbons; Marcus A Foley; Kristen O'Halloran Cardinal
Journal:  Tissue Eng Part B Rev       Date:  2012-11-05       Impact factor: 6.389

8.  Imaging challenges in biomaterials and tissue engineering.

Authors:  Alyssa A Appel; Mark A Anastasio; Jeffery C Larson; Eric M Brey
Journal:  Biomaterials       Date:  2013-06-13       Impact factor: 12.479

9.  Optical projection tomography as a tool for 3D microscopy and gene expression studies.

Authors:  James Sharpe; Ulf Ahlgren; Paul Perry; Bill Hill; Allyson Ross; Jacob Hecksher-Sørensen; Richard Baldock; Duncan Davidson
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

10.  Correction for specimen movement and rotation errors for in-vivo Optical Projection Tomography.

Authors:  Udo Jochen Birk; Matthias Rieckher; Nikos Konstantinides; Alex Darrell; Ana Sarasa-Renedo; Heiko Meyer; Nektarios Tavernarakis; Jorge Ripoll
Journal:  Biomed Opt Express       Date:  2010-07-14       Impact factor: 3.732

  10 in total
  6 in total

1.  Gaussian Light Model in Brightfield Optical Projection Tomography.

Authors:  Olli Koskela; Toni Montonen; Birhanu Belay; Edite Figueiras; Sampsa Pursiainen; Jari Hyttinen
Journal:  Sci Rep       Date:  2019-09-26       Impact factor: 4.379

2.  Optical projection tomography as a quantitative tool for analysis of cell morphology and density in 3D hydrogels.

Authors:  Birhanu Belay; Janne T Koivisto; Jenny Parraga; Olli Koskela; Toni Montonen; Minna Kellomäki; Edite Figueiras; Jari Hyttinen
Journal:  Sci Rep       Date:  2021-03-22       Impact factor: 4.379

3.  Murine cerebral organoids develop network of functional neurons and hippocampal brain region identity.

Authors:  Francesca Ciarpella; Raluca Georgiana Zamfir; Alessandra Campanelli; Elisa Ren; Giulia Pedrotti; Emanuela Bottani; Andrea Borioli; Davide Caron; Marzia Di Chio; Sissi Dolci; Annika Ahtiainen; Giorgio Malpeli; Giovanni Malerba; Rita Bardoni; Guido Fumagalli; Jari Hyttinen; Francesco Bifari; Gemma Palazzolo; Gabriella Panuccio; Giulia Curia; Ilaria Decimo
Journal:  iScience       Date:  2021-11-15

4.  Rapidly responsive silk fibroin hydrogels as an artificial matrix for the programmed tumor cells death.

Authors:  Viviana P Ribeiro; Joana Silva-Correia; Cristiana Gonçalves; Sandra Pina; Hajer Radhouani; Toni Montonen; Jari Hyttinen; Anirban Roy; Ana L Oliveira; Rui L Reis; Joaquim M Oliveira
Journal:  PLoS One       Date:  2018-04-04       Impact factor: 3.240

Review 5.  Inner ear barriers to nanomedicine-augmented drug delivery and imaging.

Authors:  Jing Zou; Ilmari Pyykkö; Jari Hyttinen
Journal:  J Otol       Date:  2016-11-25

6.  A tube-source X-ray microtomography approach for quantitative 3D microscopy of optically challenging cell-cultured samples.

Authors:  Ilmari Tamminen; Kalle Lehto; Markus Hannula; Miina Ojansivu; Laura Johansson; Minna Kellomäki; Susanna Miettinen; Antti Aula; Teemu Ihalainen; Jari Hyttinen
Journal:  Commun Biol       Date:  2020-10-02
  6 in total

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