Literature DB >> 12647867

Optical projection tomography as a new tool for studying embryo anatomy.

James Sharpe1.   

Abstract

Optical projection tomography (OPT) is a new technique for three-dimensional (3D) imaging of small biological tissues. It is particularly useful for reconstructing vertebrate embryos and for examining the 3D anatomy of developing organs. The advantages of this technique over previous methods will be explained: in particular, its ability to image at a higher resolution than magnetic resonance imaging (MRI), while at the same time being able to image specimens much larger than those possible using confocal laser-scanning microscopy. Being an optical technique, OPT is also able to take advantage of the many coloured and fluorescent dyes which have been developed for tissue-specific or gene-specific staining. This becomes particularly important for the visualization of the 3D shapes of specific organs and tissues as it allows the computer to automatically determine the outline of the desired structure.

Mesh:

Year:  2003        PMID: 12647867      PMCID: PMC1571078          DOI: 10.1046/j.1469-7580.2003.00155.x

Source DB:  PubMed          Journal:  J Anat        ISSN: 0021-8782            Impact factor:   2.610


  6 in total

1.  In vivo visualization of gene expression using magnetic resonance imaging.

Authors:  A Y Louie; M M Hüber; E T Ahrens; U Rothbächer; R Moats; R E Jacobs; S E Fraser; T J Meade
Journal:  Nat Biotechnol       Date:  2000-03       Impact factor: 54.908

2.  Three-dimensional digital mouse atlas using high-resolution MRI.

Authors:  M Dhenain; S W Ruffins; R E Jacobs
Journal:  Dev Biol       Date:  2001-04-15       Impact factor: 3.582

3.  Magnetic resonance microscopy of embryonic cell lineages and movements.

Authors:  R E Jacobs; S E Fraser
Journal:  Science       Date:  1994-02-04       Impact factor: 47.728

4.  Mammalian and Drosophila dachshund genes are related to the Ski proto-oncogene and are expressed in eye and limb.

Authors:  K L Hammond; I M Hanson; A G Brown; L A Lettice; R E Hill
Journal:  Mech Dev       Date:  1998-06       Impact factor: 1.882

Review 5.  Bioinformatics beyond sequence: mapping gene function in the embryo.

Authors:  D Davidson; R Baldock
Journal:  Nat Rev Genet       Date:  2001-06       Impact factor: 53.242

6.  Optical projection tomography as a tool for 3D microscopy and gene expression studies.

Authors:  James Sharpe; Ulf Ahlgren; Paul Perry; Bill Hill; Allyson Ross; Jacob Hecksher-Sørensen; Richard Baldock; Duncan Davidson
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

  6 in total
  51 in total

1.  Live optical projection tomography.

Authors:  Jean-François Colas; James Sharpe
Journal:  Organogenesis       Date:  2009-10       Impact factor: 2.500

Review 2.  Orofacial clefting: recent insights into a complex trait.

Authors:  Astanand Jugessur; Jeffrey C Murray
Journal:  Curr Opin Genet Dev       Date:  2005-06       Impact factor: 5.578

Review 3.  Molecular imaging perspectives.

Authors:  Paul J Cassidy; George K Radda
Journal:  J R Soc Interface       Date:  2005-06-22       Impact factor: 4.118

4.  Visualizing plant development and gene expression in three dimensions using optical projection tomography.

Authors:  Karen Lee; Jerome Avondo; Harris Morrison; Lilian Blot; Margaret Stark; James Sharpe; Andrew Bangham; Enrico Coen
Journal:  Plant Cell       Date:  2006-08-11       Impact factor: 11.277

5.  High-resolution Episcopic Microscopy (HREM) - Simple and Robust Protocols for Processing and Visualizing Organic Materials.

Authors:  Stefan H Geyer; Barbara Maurer-Gesek; Lukas F Reissig; Wolfgang J Weninger
Journal:  J Vis Exp       Date:  2017-07-07       Impact factor: 1.355

6.  High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis.

Authors:  Elisabeth Truernit; Hélène Bauby; Bertrand Dubreucq; Olivier Grandjean; John Runions; Julien Barthélémy; Jean-Christophe Palauqui
Journal:  Plant Cell       Date:  2008-06-03       Impact factor: 11.277

7.  Accelerated Stimulated Raman Projection Tomography by Sparse Reconstruction From Sparse-View Data.

Authors:  Xueli Chen; Shouping Zhu; Huiyuan Wang; Cuiping Bao; Defu Yang; Chi Zhang; Peng Lin; Ji-Xin Cheng; Yonghua Zhan; Jimin Liang; Jie Tian
Journal:  IEEE Trans Biomed Eng       Date:  2019-08-14       Impact factor: 4.538

Review 8.  Optical clearing of unsectioned specimens for three-dimensional imaging via optical transmission and emission tomography.

Authors:  Mark Oldham; Harshad Sakhalkar; Tim Oliver; G Allan Johnson; Mark Dewhirst
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

9.  Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.

Authors:  Hiroshi Hama; Hiroshi Kurokawa; Hiroyuki Kawano; Ryoko Ando; Tomomi Shimogori; Hisayori Noda; Kiyoko Fukami; Asako Sakaue-Sawano; Atsushi Miyawaki
Journal:  Nat Neurosci       Date:  2011-08-30       Impact factor: 24.884

10.  Episcopic 3D Imaging Methods: Tools for Researching Gene Function.

Authors:  Wolfgang J Weninger; Stefan H Geyer
Journal:  Curr Genomics       Date:  2008-06       Impact factor: 2.236

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