Literature DB >> 25353830

Coherent feedforward transcriptional regulatory motifs enhance drug resistance.

Daniel A Charlebois1, Gábor Balázsi2, Mads Kærn3.   

Abstract

Fluctuations in gene expression give identical cells access to a spectrum of phenotypes that can serve as a transient, nongenetic basis for natural selection by temporarily increasing drug resistance. In this study, we demonstrate using mathematical modeling and simulation that certain gene regulatory network motifs, specifically coherent feedforward loop motifs, can facilitate the development of nongenetic resistance by increasing cell-to-cell variability and the time scale at which beneficial phenotypic states can be maintained. Our results highlight how regulatory network motifs enabling transient, nongenetic inheritance play an important role in defining reproductive fitness in adverse environments and provide a selective advantage subject to evolutionary pressure.

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Year:  2014        PMID: 25353830      PMCID: PMC5749921          DOI: 10.1103/PhysRevE.89.052708

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  45 in total

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Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
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Authors:  Duc-Hau Le; Yung-Keun Kwon
Journal:  Bioinformatics       Date:  2013-01-17       Impact factor: 6.937

4.  Comparison of classical and autogenous systems of regulation in inducible operons.

Authors:  M A Savageau
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5.  Phenotypic impact of regulatory noise in cellular stress-response pathways.

Authors:  Daniil Zhuravel; Dawn Fraser; Simon St-Pierre; Lioudmila Tepliakova; Wyming L Pang; Jeff Hasty; Mads Kærn
Journal:  Syst Synth Biol       Date:  2010-04-22

Review 6.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

7.  Function of Candida glabrata ABC transporter gene, PDH1.

Authors:  Koichi Izumikawa; Hiroshi Kakeya; Huei-Fung Tsai; Brian Grimberg; John E Bennett
Journal:  Yeast       Date:  2003-02       Impact factor: 3.239

Review 8.  Non-genetic heterogeneity--a mutation-independent driving force for the somatic evolution of tumours.

Authors:  Amy Brock; Hannah Chang; Sui Huang
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

9.  Positive autoregulation of the yeast transcription factor Pdr3p, which is involved in control of drug resistance.

Authors:  A Delahodde; T Delaveau; C Jacq
Journal:  Mol Cell Biol       Date:  1995-08       Impact factor: 4.272

10.  Mapping the environmental fitness landscape of a synthetic gene circuit.

Authors:  Dmitry Nevozhay; Rhys M Adams; Elizabeth Van Itallie; Matthew R Bennett; Gábor Balázsi
Journal:  PLoS Comput Biol       Date:  2012-04-12       Impact factor: 4.475

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  15 in total

1.  Noise and low-level dynamics can coordinate multicomponent bet hedging mechanisms.

Authors:  Javier Garcia-Bernardo; Mary J Dunlop
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

2.  Bacterial temporal dynamics enable optimal design of antibiotic treatment.

Authors:  Hannah R Meredith; Allison J Lopatkin; Deverick J Anderson; Lingchong You
Journal:  PLoS Comput Biol       Date:  2015-04-23       Impact factor: 4.475

3.  Role of relaxation time scale in noisy signal transduction.

Authors:  Alok Kumar Maity; Pinaki Chaudhury; Suman K Banik
Journal:  PLoS One       Date:  2015-05-08       Impact factor: 3.240

4.  Stochasticity in the Genotype-Phenotype Map: Implications for the Robustness and Persistence of Bet-Hedging.

Authors:  Daniel Nichol; Mark Robertson-Tessi; Peter Jeavons; Alexander R A Anderson
Journal:  Genetics       Date:  2016-10-21       Impact factor: 4.562

5.  Modeling of signaling crosstalk-mediated drug resistance and its implications on drug combination.

Authors:  Xiaoqiang Sun; Jiguang Bao; Zhuhong You; Xing Chen; Jun Cui
Journal:  Oncotarget       Date:  2016-09-27

6.  Multiscale effects of heating and cooling on genes and gene networks.

Authors:  Daniel A Charlebois; Kevin Hauser; Sylvia Marshall; Gábor Balázsi
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7.  Identification of co-evolving temporal networks.

Authors:  Rasha Elhesha; Aisharjya Sarkar; Christina Boucher; Tamer Kahveci
Journal:  BMC Genomics       Date:  2019-06-13       Impact factor: 3.969

8.  Negative Regulation Gene Circuits for Efflux Pump Control.

Authors:  Daniel A Charlebois; Junchen Diao; Dmitry Nevozhay; Gábor Balázsi
Journal:  Methods Mol Biol       Date:  2018

9.  Efflux Pump Control Alters Synthetic Gene Circuit Function.

Authors:  Junchen Diao; Daniel A Charlebois; Dmitry Nevozhay; Zoltán Bódi; Csaba Pál; Gábor Balázsi
Journal:  ACS Synth Biol       Date:  2016-05-04       Impact factor: 5.110

10.  Identification of large disjoint motifs in biological networks.

Authors:  Rasha Elhesha; Tamer Kahveci
Journal:  BMC Bioinformatics       Date:  2016-10-06       Impact factor: 3.169

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