Literature DB >> 22329347

Entropy-driven single molecule tug-of-war of DNA at micro-nanofluidic interfaces.

Jia-Wei Yeh1, Alessandro Taloni, Yeng-Long Chen, Chia-Fu Chou.   

Abstract

Entropy-driven polymer dynamics at the nanoscale is fundamentally important in biological systems but the dependence of the entropic force on the nanoconfinement remains elusive. Here, we established an entropy-driven single molecule tug-of-war (TOW) at two micro-nanofluidic interfaces bridged by a nanoslit, performed the force analysis from a modified wormlike chain in the TOW scenario and the entropic recoiling process, and determined the associated scalings on the nanoconfinement. Our results provide a direct experimental evidence that the entropic forces in these two regimes, though unequal, are essentially constant at defined slit heights, irrespective of the slit lengths and the DNA segments within. Our findings have the implications to polymer transport at the nanoscale, device design for single molecule analysis, and biotechnological applications.
© 2012 American Chemical Society

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Year:  2012        PMID: 22329347     DOI: 10.1021/nl2045292

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  12 in total

1.  Biofunctionalized nanoslits for wash-free and spatially resolved real-time sensing with full target capture.

Authors:  Thierry Leïchlé; Chia-Fu Chou
Journal:  Biomicrofluidics       Date:  2015-05-13       Impact factor: 2.800

2.  Electrophoretic stretching and imaging of single native chromatin fibers in nanoslits.

Authors:  Jia-Wei Yeh; Kylan Szeto
Journal:  Biomicrofluidics       Date:  2017-07-25       Impact factor: 2.800

Review 3.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

4.  DNA translocation through short nanofluidic channels under asymmetric pulsed electric field.

Authors:  C Gupta; W-C Liao; D Gallego-Perez; C E Castro; L J Lee
Journal:  Biomicrofluidics       Date:  2014-04-16       Impact factor: 2.800

5.  Tandem array of nanoelectronic readers embedded coplanar to a fluidic nanochannel for correlated single biopolymer analysis.

Authors:  Leonardo Lesser-Rojas; K K Sriram; Kuo-Tang Liao; Shui-Chin Lai; Pai-Chia Kuo; Ming-Lee Chu; Chia-Fu Chou
Journal:  Biomicrofluidics       Date:  2014-01-10       Impact factor: 2.800

6.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

7.  DNA combing on low-pressure oxygen plasma modified polysilsesquioxane substrates for single-molecule studies.

Authors:  K K Sriram; Chun-Ling Chang; U Rajesh Kumar; Chia-Fu Chou
Journal:  Biomicrofluidics       Date:  2014-08-06       Impact factor: 2.800

8.  Spatial confinement induces hairpins in nicked circular DNA.

Authors:  Aleksandre Japaridze; Enzo Orlandini; Kathleen Beth Smith; Lucas Gmür; Francesco Valle; Cristian Micheletti; Giovanni Dietler
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

9.  Single-molecule DNA-mapping and whole-genome sequencing of individual cells.

Authors:  Rodolphe Marie; Jonas N Pedersen; Loic Bærlocher; Kamila Koprowska; Marie Pødenphant; Céline Sabatel; Maksim Zalkovskij; Andrej Mironov; Brian Bilenberg; Neil Ashley; Henrik Flyvbjerg; Walter F Bodmer; Anders Kristensen; Kalim U Mir
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-15       Impact factor: 11.205

10.  High-Fidelity Capture, Threading, and Infinite-Depth Sequencing of Single DNA Molecules with a Double-Nanopore System.

Authors:  Adnan Choudhary; Himanshu Joshi; Han-Yi Chou; Kumar Sarthak; James Wilson; Christopher Maffeo; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2020-11-11       Impact factor: 15.881

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