Literature DB >> 25309271

Crystal structure of phen-yl(pyridin-2-yl)methanol.

Haneol Kim1, Sung Kwon Kang1.   

Abstract

In the title compound, C12H11NO, the pyridine and phenyl rings are inclined to each other by 71.42 (10)°. In the crystal, O-H⋯N hydrogen bonds link the mol-ecules into helical chains extending along the c-axis direction.

Entities:  

Keywords:  crystal structure; hydrogen bonding; phen­yl(pyridin-2-yl)methanol

Year:  2014        PMID: 25309271      PMCID: PMC4186067          DOI: 10.1107/S1600536814016857

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and some derivatives, see: Frassoldati et al. (2013 ▶); Tao et al. (2012 ▶). For its use in synthesis, see: Miyamura et al. (2008 ▶); Lucchesi et al. (2008 ▶); Lash et al. (2007 ▶); Szajna et al. (2004 ▶).

Experimental

Crystal data

C12H11NO M = 185.22 Orthorhombic, a = 7.4385 (8) Å b = 14.3429 (16) Å c = 9.2255 (10) Å V = 984.27 (19) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.3 × 0.26 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer 7290 measured reflections 2245 independent reflections 1190 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.084 S = 0.81 2245 reflections 131 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.09 e Å−3 Δρmin = −0.12 e Å−3

Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016857/su2760sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016857/su2760Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016857/su2760Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814016857/su2760fig1.tif Mol­ecular structure of the title mol­ecule, with atom labelling. The displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814016857/su2760fig2.tif A view along the a axis of the crystal packing of the title compound, showing mol­ecules linked by O—H⋯N hydrogen bonds (dashed lines; see Table 1 for details). CCDC reference: 1015307 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H11NOF(000) = 392
Mr = 185.22Dx = 1.25 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 973 reflections
a = 7.4385 (8) Åθ = 2.6–19.7°
b = 14.3429 (16) ŵ = 0.08 mm1
c = 9.2255 (10) ÅT = 296 K
V = 984.27 (19) Å3Block, colourless
Z = 40.3 × 0.26 × 0.18 mm
Bruker SMART CCD area-detector diffractometerRint = 0.055
Radiation source: fine-focus sealed tubeθmax = 27.5°, θmin = 2.6°
φ and ω scansh = −7→9
7290 measured reflectionsk = −18→18
2245 independent reflectionsl = −11→11
1190 reflections with I > 2σ(I)
Refinement on F21 restraint
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0303P)2] where P = (Fo2 + 2Fc2)/3
S = 0.81(Δ/σ)max < 0.001
2245 reflectionsΔρmax = 0.09 e Å3
131 parametersΔρmin = −0.12 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
N10.4374 (3)0.37463 (19)0.8538 (3)0.0544 (7)
C20.4309 (5)0.2902 (3)0.9150 (5)0.0738 (12)
H20.46160.28511.01240.089*
C30.3819 (5)0.2112 (3)0.8433 (6)0.0773 (12)
H30.37940.1540.89070.093*
C40.3365 (4)0.2177 (2)0.7004 (5)0.0733 (12)
H40.3020.16510.64850.088*
C50.3426 (4)0.3039 (2)0.6344 (4)0.0582 (9)
H50.31190.31040.53720.07*
C60.3949 (4)0.3804 (2)0.7141 (3)0.0434 (7)
C70.4046 (4)0.4769 (2)0.6482 (3)0.0501 (8)
H70.50210.51160.69490.06*
O80.4471 (3)0.46457 (19)0.5006 (3)0.0700 (7)
H80.474 (5)0.526 (3)0.460 (5)0.111 (16)*
C90.2299 (3)0.52994 (18)0.6693 (3)0.0409 (7)
C100.0771 (4)0.5047 (2)0.5952 (4)0.0587 (9)
H100.08170.45490.53070.07*
C11−0.0819 (4)0.5515 (3)0.6146 (4)0.0715 (11)
H11−0.18370.53340.56330.086*
C12−0.0908 (5)0.6244 (3)0.7087 (4)0.0679 (10)
H12−0.19890.65570.72240.081*
C130.0579 (5)0.6514 (2)0.7824 (4)0.0697 (10)
H130.05150.70170.84590.084*
C140.2204 (4)0.6043 (2)0.7639 (4)0.0570 (8)
H140.32190.6230.81510.068*
U11U22U33U12U13U23
N10.0530 (17)0.061 (2)0.0488 (19)0.0047 (13)0.0014 (14)0.0027 (15)
C20.066 (3)0.084 (3)0.071 (3)0.019 (2)0.008 (2)0.024 (2)
C30.059 (2)0.059 (3)0.114 (4)0.006 (2)0.015 (2)0.029 (3)
C40.059 (2)0.049 (2)0.112 (4)0.0045 (17)0.006 (3)−0.008 (2)
C50.056 (2)0.057 (2)0.062 (2)0.0079 (16)0.0005 (17)−0.0047 (19)
C60.0362 (15)0.0463 (19)0.0476 (19)0.0058 (13)0.0045 (15)−0.0004 (15)
C70.0500 (18)0.0578 (19)0.0426 (19)−0.0030 (15)0.0052 (15)−0.0001 (16)
O80.0827 (17)0.0741 (18)0.0530 (15)0.0020 (14)0.0260 (13)0.0028 (13)
C90.0452 (16)0.0391 (15)0.0383 (15)−0.0036 (14)0.0017 (14)0.0062 (14)
C100.059 (2)0.047 (2)0.069 (2)−0.0019 (17)−0.0103 (18)−0.0040 (17)
C110.052 (2)0.072 (2)0.090 (3)0.0003 (19)−0.009 (2)0.010 (2)
C120.061 (2)0.071 (2)0.072 (3)0.016 (2)0.011 (2)0.014 (2)
C130.091 (3)0.057 (2)0.061 (2)0.018 (2)0.004 (2)−0.005 (2)
C140.066 (2)0.0535 (18)0.0512 (19)−0.0022 (16)−0.0088 (18)−0.0012 (17)
N1—C61.329 (4)C7—H70.98
N1—C21.338 (4)O8—H80.98 (5)
C2—C31.362 (5)C9—C101.374 (4)
C2—H20.93C9—C141.380 (4)
C3—C41.364 (5)C10—C111.372 (4)
C3—H30.93C10—H100.93
C4—C51.379 (5)C11—C121.361 (5)
C4—H40.93C11—H110.93
C5—C61.376 (4)C12—C131.354 (5)
C5—H50.93C12—H120.93
C6—C71.514 (4)C13—C141.395 (4)
C7—O81.408 (4)C13—H130.93
C7—C91.518 (4)C14—H140.93
C6—N1—C2117.2 (3)C9—C7—H7108.8
N1—C2—C3123.9 (4)C7—O8—H8108 (3)
N1—C2—H2118.1C10—C9—C14118.4 (3)
C3—C2—H2118.1C10—C9—C7120.8 (3)
C2—C3—C4118.6 (4)C14—C9—C7120.8 (3)
C2—C3—H3120.7C11—C10—C9121.3 (3)
C4—C3—H3120.7C11—C10—H10119.4
C3—C4—C5118.7 (4)C9—C10—H10119.4
C3—C4—H4120.7C12—C11—C10120.1 (4)
C5—C4—H4120.7C12—C11—H11120
C6—C5—C4119.2 (3)C10—C11—H11120
C6—C5—H5120.4C13—C12—C11120.0 (3)
C4—C5—H5120.4C13—C12—H12120
N1—C6—C5122.4 (3)C11—C12—H12120
N1—C6—C7115.8 (3)C12—C13—C14120.5 (3)
C5—C6—C7121.8 (3)C12—C13—H13119.8
O8—C7—C6106.5 (3)C14—C13—H13119.8
O8—C7—C9112.3 (2)C9—C14—C13119.8 (3)
C6—C7—C9111.4 (2)C9—C14—H14120.1
O8—C7—H7108.8C13—C14—H14120.1
C6—C7—H7108.8
D—H···AD—HH···AD···AD—H···A
O8—H8···N1i0.98 (5)1.85 (5)2.809 (4)166 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O8—H8⋯N1i 0.98 (5)1.85 (5)2.809 (4)166 (4)

Symmetry code: (i) .

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