Literature DB >> 22606144

Cyclo-octanaminium hydrogen succinate monohydrate.

Sanaz Khorasani1, Manuel A Fernandes.   

Abstract

In the title hydrated salt, C(8)H(18)N(+)·C(4)H(5)O(4) (-)·H(2)O, the cyclo-octyl- ring of the cation is disordered over two positions in a 0.833 (3):0.167 (3) ratio. The structure contains various O-H.·O and N-H⋯O inter-actions, forming a hydrogen-bonded layer of mol-ecules perpendicular to the c axis. In each layer, the ammonium cation hydrogen bonds to two hydrogen succinate anions and one water mol-ecule. Each hydrogen succinate anion hydrogen bonds to neighbouring anions, forming a chain of mol-ecules along the b axis. In addition, each hydrogen succinate anion hydrogen bonds to two water mol-ecules and the ammonium cation.

Entities:  

Year:  2012        PMID: 22606144      PMCID: PMC3344141          DOI: 10.1107/S1600536812011208

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For studies involving hydrogen-bonding inter­actions, see: Latimer & Rodebush (1920 ▶); Pimentel & McClellan (1960 ▶); Lemmerer (2011a ▶,b ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C8H18NC4H5O4 −·H2O M = 263.33 Orthorhombic, a = 8.4221 (6) Å b = 14.3704 (9) Å c = 23.7031 (16) Å V = 2868.8 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.46 × 0.42 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer 12354 measured reflections 3461 independent reflections 2245 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.145 S = 1.04 3461 reflections 198 parameters 30 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-NT (Bruker, 2005 ▶); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and SCHAKAL99 (Keller, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812011208/sj5211sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011208/sj5211Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812011208/sj5211Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H18N+·C4H5O4·H2OF(000) = 1152
Mr = 263.33Dx = 1.219 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2803 reflections
a = 8.4221 (6) Åθ = 2.9–27.8°
b = 14.3704 (9) ŵ = 0.09 mm1
c = 23.7031 (16) ÅT = 173 K
V = 2868.8 (3) Å3Block, colourless
Z = 80.46 × 0.42 × 0.10 mm
Bruker APEXII CCD diffractometer2245 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.038
Graphite monochromatorθmax = 28.0°, θmin = 1.7°
φ and ω scansh = −9→11
12354 measured reflectionsk = −18→18
3461 independent reflectionsl = −15→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0721P)2 + 0.4241P] where P = (Fo2 + 2Fc2)/3
3461 reflections(Δ/σ)max < 0.001
198 parametersΔρmax = 0.64 e Å3
30 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.1688 (2)0.60717 (12)0.41032 (7)0.0245 (4)
C20.2573 (3)0.64226 (13)0.35928 (8)0.0369 (5)
H2A0.24160.59760.32800.044*
H2B0.37220.64350.36820.044*
C30.2077 (3)0.73821 (13)0.33930 (8)0.0379 (5)
H3A0.25650.75010.30200.046*
H3B0.09100.73910.33430.046*
C40.2540 (2)0.81521 (12)0.37880 (7)0.0259 (4)
O10.20323 (19)0.52624 (8)0.42678 (5)0.0377 (4)
O20.06634 (15)0.65701 (9)0.43292 (5)0.0321 (3)
O30.19460 (16)0.89565 (8)0.36302 (5)0.0331 (3)
H30.22870.93780.38430.050*
O40.33717 (17)0.80532 (9)0.41988 (5)0.0351 (3)
C50.2848 (3)0.49102 (16)0.57502 (9)0.0277 (5)0.833 (3)
H50.39980.50170.56670.033*0.833 (3)
C60.1996 (3)0.58377 (14)0.57461 (9)0.0288 (5)0.833 (3)
H6A0.08730.57350.58520.035*0.833 (3)
H6B0.20090.60870.53570.035*0.833 (3)
C70.2706 (8)0.6568 (3)0.61424 (15)0.0391 (10)0.833 (3)
H7A0.38270.63990.62150.047*0.833 (3)
H7B0.27060.71740.59440.047*0.833 (3)
C80.1887 (4)0.66935 (19)0.67014 (11)0.0491 (7)0.833 (3)
H8A0.26810.69490.69680.059*0.833 (3)
H8B0.10650.71790.66500.059*0.833 (3)
C90.1127 (4)0.5907 (2)0.69798 (13)0.0453 (8)0.833 (3)
H9A0.04060.56140.67020.054*0.833 (3)
H9B0.04500.61600.72850.054*0.833 (3)
C100.2099 (6)0.5162 (3)0.72271 (15)0.0524 (11)0.833 (3)
H10A0.13720.46760.73720.063*0.833 (3)
H10B0.26680.54250.75560.063*0.833 (3)
C110.3367 (3)0.46707 (17)0.68355 (10)0.0395 (7)0.833 (3)
H11A0.42190.51210.67460.047*0.833 (3)
H11B0.38530.41480.70450.047*0.833 (3)
C120.2701 (6)0.4314 (2)0.63067 (12)0.0482 (10)0.833 (3)
H12A0.15570.41970.63720.058*0.833 (3)
H12B0.32020.37030.62320.058*0.833 (3)
C5B0.2128 (17)0.4898 (8)0.5839 (5)0.0297 (15)*0.167 (3)
H5B0.10590.51550.59360.036*0.167 (3)
C6B0.3370 (13)0.5619 (7)0.5758 (4)0.0297 (15)*0.167 (3)
H6C0.35100.57400.53500.036*0.167 (3)
H6D0.43920.53880.59100.036*0.167 (3)
C7B0.291 (4)0.6541 (14)0.6063 (7)0.0297 (15)*0.167 (3)
H7C0.36720.70260.59380.036*0.167 (3)
H7D0.18520.67290.59240.036*0.167 (3)
C8B0.2862 (16)0.6565 (8)0.6697 (4)0.0297 (15)*0.167 (3)
H8C0.26680.72190.68090.036*0.167 (3)
H8D0.39380.64020.68330.036*0.167 (3)
C9B0.1692 (17)0.5967 (9)0.7026 (6)0.0297 (15)*0.167 (3)
H9C0.13730.62980.73750.036*0.167 (3)
H9D0.07280.58650.67960.036*0.167 (3)
C10B0.241 (3)0.5046 (11)0.7179 (8)0.0297 (15)*0.167 (3)
H10C0.19530.48330.75410.036*0.167 (3)
H10D0.35670.51240.72320.036*0.167 (3)
C11B0.2108 (14)0.4281 (7)0.6716 (4)0.0297 (15)*0.167 (3)
H11C0.22550.36880.69220.036*0.167 (3)
H11D0.09530.43250.66420.036*0.167 (3)
C12B0.269 (3)0.4122 (11)0.6238 (6)0.0297 (15)*0.167 (3)
H12C0.23380.35070.60980.036*0.167 (3)
H12D0.38690.41180.62600.036*0.167 (3)
N10.21505 (19)0.43116 (10)0.52915 (6)0.0265 (3)
H1A0.12130.40640.54090.040*0.833 (3)
H1B0.28460.38450.52120.040*0.833 (3)
H1C0.19840.46590.49760.040*0.833 (3)
H1D0.23410.46410.49710.040*0.167 (3)
H1E0.10910.41980.53220.040*0.167 (3)
H1F0.26870.37620.52780.040*0.167 (3)
O1W0.0370 (2)0.80506 (10)0.50947 (7)0.0424 (4)
H1WA0.061 (4)0.764 (2)0.4866 (12)0.071 (9)*
H1WB−0.029 (3)0.7817 (17)0.5325 (11)0.060 (8)*
U11U22U33U12U13U23
C10.0283 (10)0.0228 (8)0.0223 (8)−0.0050 (8)−0.0029 (7)−0.0023 (6)
C20.0552 (13)0.0230 (9)0.0327 (10)0.0022 (9)0.0148 (9)−0.0003 (7)
C30.0630 (15)0.0269 (9)0.0239 (9)−0.0035 (10)0.0035 (9)0.0029 (7)
C40.0287 (9)0.0231 (8)0.0258 (8)−0.0011 (7)0.0050 (8)0.0049 (7)
O10.0629 (10)0.0207 (6)0.0294 (7)0.0024 (6)0.0016 (7)0.0029 (5)
O20.0326 (7)0.0308 (7)0.0331 (7)−0.0005 (6)0.0065 (6)−0.0058 (5)
O30.0427 (8)0.0220 (6)0.0345 (7)0.0010 (6)−0.0086 (6)0.0048 (5)
O40.0384 (8)0.0296 (7)0.0373 (7)0.0021 (6)−0.0091 (6)0.0068 (5)
C50.0279 (12)0.0276 (11)0.0277 (11)0.0047 (11)−0.0060 (10)−0.0061 (8)
C60.0406 (14)0.0232 (10)0.0225 (10)0.0022 (10)−0.0017 (9)0.0011 (8)
C70.054 (3)0.0220 (11)0.0417 (19)−0.0071 (13)0.0006 (16)−0.0053 (12)
C80.070 (2)0.0410 (14)0.0369 (14)0.0016 (14)−0.0018 (14)−0.0144 (11)
C90.0325 (16)0.0675 (18)0.0361 (14)0.0066 (14)0.0040 (13)−0.0117 (12)
C100.067 (3)0.063 (2)0.0265 (14)0.0106 (18)0.0140 (15)0.0001 (13)
C110.0496 (16)0.0371 (13)0.0319 (12)0.0087 (12)−0.0139 (11)0.0000 (10)
C120.081 (2)0.0314 (17)0.0318 (15)0.0261 (18)−0.0134 (15)−0.0079 (11)
N10.0344 (9)0.0213 (7)0.0236 (7)0.0021 (7)−0.0010 (6)−0.0009 (5)
O1W0.0498 (10)0.0402 (8)0.0372 (8)−0.0188 (8)0.0151 (7)−0.0122 (7)
C1—O21.243 (2)C12—H12A0.9900
C1—O11.260 (2)C12—H12B0.9900
C1—C21.508 (3)C5B—C6B1.485 (13)
C2—C31.517 (3)C5B—C12B1.539 (15)
C2—H2A0.9900C5B—N11.547 (13)
C2—H2B0.9900C5B—H5B1.0000
C3—C41.501 (3)C6B—C7B1.557 (17)
C3—H3A0.9900C6B—H6C0.9900
C3—H3B0.9900C6B—H6D0.9900
C4—O41.208 (2)C7B—C8B1.506 (16)
C4—O31.314 (2)C7B—H7C0.9900
O3—H30.8400C7B—H7D0.9900
C5—N11.506 (3)C8B—C9B1.522 (14)
C5—C61.514 (3)C8B—H8C0.9900
C5—C121.577 (4)C8B—H8D0.9900
C5—H51.0000C9B—C10B1.499 (16)
C6—C71.530 (5)C9B—H9C0.9900
C6—H6A0.9900C9B—H9D0.9900
C6—H6B0.9900C10B—C11B1.573 (16)
C7—C81.505 (4)C10B—H10C0.9900
C7—H7A0.9900C10B—H10D0.9900
C7—H7B0.9900C11B—C12B1.257 (15)
C8—C91.457 (4)C11B—H11C0.9900
C8—H8A0.9900C11B—H11D0.9900
C8—H8B0.9900C12B—H12C0.9900
C9—C101.470 (4)C12B—H12D0.9900
C9—H9A0.9900N1—H1A0.9100
C9—H9B0.9900N1—H1B0.9100
C10—C111.581 (4)N1—H1C0.9100
C10—H10A0.9900N1—H1D0.9100
C10—H10B0.9900N1—H1E0.9100
C11—C121.466 (4)N1—H1F0.9100
C11—H11A0.9900O1W—H1WA0.83 (3)
C11—H11B0.9900O1W—H1WB0.85 (3)
O2—C1—O1123.91 (17)C6B—C5B—H5B113.9
O2—C1—C2119.76 (16)C12B—C5B—H5B113.9
O1—C1—C2116.32 (16)N1—C5B—H5B113.9
C1—C2—C3114.74 (17)C5B—C6B—C7B111.1 (14)
C1—C2—H2A108.6C5B—C6B—H6C109.4
C3—C2—H2A108.6C7B—C6B—H6C109.4
C1—C2—H2B108.6C5B—C6B—H6D109.4
C3—C2—H2B108.6C7B—C6B—H6D109.4
H2A—C2—H2B107.6H6C—C6B—H6D108.0
C4—C3—C2113.84 (17)C8B—C7B—C6B119.3 (16)
C4—C3—H3A108.8C8B—C7B—H7C107.5
C2—C3—H3A108.8C6B—C7B—H7C107.5
C4—C3—H3B108.8C8B—C7B—H7D107.5
C2—C3—H3B108.8C6B—C7B—H7D107.5
H3A—C3—H3B107.7H7C—C7B—H7D107.0
O4—C4—O3123.63 (16)C7B—C8B—C9B121.2 (14)
O4—C4—C3124.51 (16)C7B—C8B—H8C107.0
O3—C4—C3111.86 (16)C9B—C8B—H8C107.0
C4—O3—H3109.5C7B—C8B—H8D107.0
N1—C5—C6108.26 (17)C9B—C8B—H8D107.0
N1—C5—C12105.3 (2)H8C—C8B—H8D106.8
C6—C5—C12116.5 (2)C10B—C9B—C8B111.2 (13)
N1—C5—H5108.9C10B—C9B—H9C109.4
C6—C5—H5108.9C8B—C9B—H9C109.4
C12—C5—H5108.9C10B—C9B—H9D109.4
C5—C6—C7114.5 (3)C8B—C9B—H9D109.4
C5—C6—H6A108.6H9C—C9B—H9D108.0
C7—C6—H6A108.6C9B—C10B—C11B112.6 (14)
C5—C6—H6B108.6C9B—C10B—H10C109.1
C7—C6—H6B108.6C11B—C10B—H10C109.1
H6A—C6—H6B107.6C9B—C10B—H10D109.1
C8—C7—C6116.3 (4)C11B—C10B—H10D109.1
C8—C7—H7A108.2H10C—C10B—H10D107.8
C6—C7—H7A108.2C12B—C11B—C10B133.8 (15)
C8—C7—H7B108.2C12B—C11B—H11C103.8
C6—C7—H7B108.2C10B—C11B—H11C103.8
H7A—C7—H7B107.4C12B—C11B—H11D103.8
C9—C8—C7120.5 (3)C10B—C11B—H11D103.8
C9—C8—H8A107.2H11C—C11B—H11D105.4
C7—C8—H8A107.2C11B—C12B—C5B107.4 (13)
C9—C8—H8B107.2C11B—C12B—H12C110.2
C7—C8—H8B107.2C5B—C12B—H12C110.2
H8A—C8—H8B106.8C11B—C12B—H12D110.2
C8—C9—C10120.0 (3)C5B—C12B—H12D110.2
C8—C9—H9A107.3H12C—C12B—H12D108.5
C10—C9—H9A107.3C5—N1—H1A109.9
C8—C9—H9B107.3C5B—N1—H1A86.8
C10—C9—H9B107.3C5—N1—H1B108.6
H9A—C9—H9B106.9C5B—N1—H1B125.6
C9—C10—C11117.9 (3)H1A—N1—H1B109.5
C9—C10—H10A107.8C5—N1—H1C109.9
C11—C10—H10A107.8C5B—N1—H1C112.9
C9—C10—H10B107.8H1A—N1—H1C109.5
C11—C10—H10B107.8H1B—N1—H1C109.5
H10A—C10—H10B107.2C5—N1—H1D103.8
C12—C11—C10113.6 (3)C5B—N1—H1D114.9
C12—C11—H11A108.9H1A—N1—H1D127.8
C10—C11—H11A108.9H1B—N1—H1D95.6
C12—C11—H11B108.9C5—N1—H1E115.3
C10—C11—H11B108.9C5B—N1—H1E91.1
H11A—C11—H11B107.7H1B—N1—H1E121.0
C11—C12—C5119.7 (3)H1C—N1—H1E90.8
C11—C12—H12A107.4H1D—N1—H1E109.5
C5—C12—H12A107.4C5—N1—H1F109.1
C11—C12—H12B107.4C5B—N1—H1F120.6
C5—C12—H12B107.4H1A—N1—H1F95.9
H12A—C12—H12B106.9H1C—N1—H1F121.5
C6B—C5B—C12B111.5 (12)H1D—N1—H1F109.5
C6B—C5B—N1105.3 (9)H1E—N1—H1F109.5
C12B—C5B—N196.7 (9)H1WA—O1W—H1WB107 (2)
O2—C1—C2—C3−1.1 (3)C12B—C5B—C6B—C7B−108.6 (15)
O1—C1—C2—C3177.55 (17)N1—C5B—C6B—C7B147.6 (12)
C1—C2—C3—C469.2 (2)C5B—C6B—C7B—C8B68 (3)
C2—C3—C4—O47.5 (3)C6B—C7B—C8B—C9B−63 (3)
C2—C3—C4—O3−173.33 (17)C7B—C8B—C9B—C10B91.6 (19)
N1—C5—C6—C7−173.0 (2)C8B—C9B—C10B—C11B−90.2 (17)
C12—C5—C6—C768.7 (4)C9B—C10B—C11B—C12B76 (2)
C5—C6—C7—C8−99.4 (4)C10B—C11B—C12B—C5B−70 (2)
C6—C7—C8—C932.6 (6)C6B—C5B—C12B—C11B100.1 (17)
C7—C8—C9—C1070.8 (5)N1—C5B—C12B—C11B−150.5 (14)
C8—C9—C10—C11−54.0 (5)C6—C5—N1—C5B−60.1 (11)
C9—C10—C11—C12−53.1 (5)C12—C5—N1—C5B65.1 (12)
C10—C11—C12—C597.5 (4)C6B—C5B—N1—C530.7 (7)
N1—C5—C12—C11176.1 (3)C12B—C5B—N1—C5−83.8 (15)
C6—C5—C12—C11−63.9 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.841.722.5586 (18)179
N1—H1A···O2ii0.911.932.834 (2)175
N1—H1B···O1Wiii0.911.912.804 (2)168
N1—H1C···O10.911.892.7866 (19)168
N1—H1A···O2ii0.911.932.834 (2)175
O1W—H1WA···O20.83 (3)1.99 (3)2.807 (2)167 (3)
O1W—H1WB···O4iv0.85 (3)2.03 (3)2.855 (2)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1i0.841.722.5586 (18)179
N1—H1A⋯O2ii0.911.932.834 (2)175
N1—H1B⋯O1Wiii0.911.912.804 (2)168
N1—H1C⋯O10.911.892.7866 (19)168
N1—H1A⋯O2ii0.911.932.834 (2)175
O1W—H1WA⋯O20.83 (3)1.99 (3)2.807 (2)167 (3)
O1W—H1WB⋯O4iv0.85 (3)2.03 (3)2.855 (2)165 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of allyl-ammonium hydrogen succinate at 100 K.

Authors:  Błażej Dziuk; Bartosz Zarychta; Krzysztof Ejsmont
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  1 in total

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