| Literature DB >> 25301978 |
Jing Yang1, Jingjing Li1, Rong Zhu1, Huawei Zhang1, Yuanyuan Zheng1, Weiqi Dai1, Fan Wang1, Miao Shen1, Kan Chen1, Ping Cheng1, Yan Zhang1, Chengfen Wang1, Junshan Wang1, Yujing Xia1, Jie Lu1, Yingqun Zhou1, Chuanyong Guo1.
Abstract
BACKGROUND: More clinically meaningful diagnostic tests are needed in pancreatic cancer (PC). K-ras mutations are the most frequently acquired genetic alteration.Entities:
Mesh:
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Year: 2014 PMID: 25301978 PMCID: PMC4124783 DOI: 10.1155/2014/573783
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Figure 1Flow diagram showing the process of article selection for the meta-analysis.
Main characteristics of the studies included.
| Study | Country | TP/FP/FN/TN | Number | Invasive | Assay type |
|---|---|---|---|---|---|
|
Trümper et al., 1994 [ | Germany | 16/0/0/11 | 1 | Moderate | PCR-SSCP + enriched PCR-RFLP |
| Watanabe et al., 1998 [ | Japan | 19/1/10/36 | 2 | Moderate | PCR-HPA |
| 22/5/6/32 | 3 | Very | PCR-RFLP | ||
| Mora et al., 1998 [ | Spain | 35/0/8/16 | 4 | Minimal | Enriched RFLP-PCR + SSCP |
| Wenger et al., 1999 [ | Germany | 28/3/8/12 | 5 | Very | PCR + hybridization |
| Castells et al., 1999 [ | Spain | 28/4/11/22 | 6 | Minimal | PCR-RFLP + SSCP |
| Okai et al., 1999 [ | Japan | 14/2/5/15 | 7 | Moderate | PCR-RFLP |
| Futakawa et al., 2000 [ | Japan | 8/4/10/24 | 8 | Moderate | PCR-RFLP |
| Tada et al., 2002a [ | Japan | 20/0/6/8 | 9 | Minimal | Enriched PCR and enzyme linked minisequence assay |
| 12/0/7/5 | 10 | Moderate | |||
|
Dianxu et al., 2002 [ | China | 33/1/3/13 | 11 | Very | PCR-RFLP |
| Tada et al., 2002b [ | Japan | 10/5/28/57 | 12 | Moderate | PCR-PHFA |
| 18/8/20/54 | 13 | Moderate | PCR-ELMA | ||
| Zheng et al., 2003 [ | China | 45/0/9/12 | 14 | Minimal | PCR-RFLP |
| Liu et al., 2003 [ | China | 14/1/6/14 | 15 | Moderate | PCR-SSCP |
| Talar-Wojnarowska et al., 2005 [ | Poland | 20/8/6/15 | 16 | Very | PCR-RFLP |
| Shi et al., 2008 [ | USA | 16/1/1/8 | 17 | Moderate | LigAmp strategy |
| Parker et al., 2011 [ | Spain | 94/20/27/71 | 18 | Very | PCR-RFLP |
| Ogura et al., 2012 [ | Japan | 266/0/40/47 | 19 | Moderate | PCR-direct sequence assay |
TP: true positive; FP: false positive; FN: false negative; and TN: true negative.
∗According to how the material was obtained, the types of sample used for K-ras analysis were divided into three groups: fine needle aspiration (FNA) was considered minimally invasive, endoscopic retrograde cholangio-pancreatography (ERCP) moderately invasive, and surgery very invasive.
Figure 2Summary of the methodological quality of included studies on the basis of review authors' judgments on the four domains of the QUADAS-2 checklist for each study.
Figure 3Forest plot of the meta-analysis of each index.
Summary of the diagnostic accuracy of K-ras mutation level in different materials in the same patient group using MetaDisc (Version 1.4).
| FNA | ERCP | Surgery | |
|---|---|---|---|
| SEN | 79 (95% CI: 72–85%) | 76% (95% CI: 72–79%) | 80% (95% CI: 74–85%) |
| SPE | 94 (95% CI: 84–98%) | 92% (95% CI: 89–95%) | 79% (95% CI: 73–85%) |
| PLR | 7.87 (95% CI: 2.95–20.97) | 6.83 (95% CI: 3.40–13.73) | 3.64 (2.42–5.47) |
| NLR | 0.24 (95% CI: 0.18–0.32) | 0.34 (95% CI: 0.19–0.58) | 0.26 (0.20–0.36) |
| DOR | 34.26 (95% CI: 10.01–117.2) | 23.92 (95% CI: 8.20–69.77) | 14.88 (95% CI: 7.51–29.47) |
| AUC | 0.6957 | 0.9541 | 0.8540 |
SEN: sensitivity; SPE: specificity; PLR: positive likelihood ratio; NLR: negative likelihood ratio; DOR: diagnostic odds ratio; and AUC: area under curve.
Figure 4Summary receiver-operating characteristic curves for detecting K-ras mutation using FNA/ERCP/surgical methods from the hierarchical summary receiver operating characteristic model.
Summary of the diagnostic accuracy of K-ras mutation level in different materials in the same patient group using MetaDisc (version 1.4).
| Summary | Serum | Cytohistological material |
|---|---|---|
| Sensitivity | 41% (95% CI: 33–50%) | 77% (95% CI: 74–80%) |
| Specificity | 95% (95% CI: 90–99%) | 88% (95% CI: 85–91%) |
| DOR | 17.36 (95% CI: 6.61–45.59) | 20.26 (95% CI: 11.40–36.03) |
Figure 5Forest plot of the meta-analysis of seven studies which included the diagnostic value of cytology for detecting PC.
Metaregression of the effects of methodological characteristics on diagnostic accuracy.
| Var. | Coeff. | Std. Err. |
| DOR | 95% CI |
|---|---|---|---|---|---|
| Assay type | 0.212 | 0.8041 | 0.7954 | 1.24 | 0.22–6.94 |
| Country | 0.431 | 0.9861 | 0.6690 | 1.54 | 0.19–12.75 |
Figure 6Deeks funnel plot output using the “metafunnel” command for Stata (version 12.0).