Literature DB >> 25296890

Hydration Gibbs free energies of open and closed shell trivalent lanthanide and actinide cations from polarizable molecular dynamics.

Aude Marjolin1, Christophe Gourlaouen, Carine Clavaguéra, Pengyu Y Ren, Jean-Philip Piquemal, Jean-Pierre Dognon.   

Abstract

The hydration free energies, structures, and dynamics of open- and closed-shell trivalent lanthanide and actinide metal cations are studied using molecular dynamics simulations (MD) based on a polarizable force field. Parameters for the metal cations are derived from an ab initio bottom-up strategy. MD simulations of six cations solvated in bulk water are subsequently performed with the AMOEBA polarizable force field. The calculated first-and second shell hydration numbers, water residence times, and free energies of hydration are consistent with experimental/theoretical values leading to a predictive modeling of f-elements compounds.

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Year:  2014        PMID: 25296890     DOI: 10.1007/s00894-014-2471-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  22 in total

1.  Ion solvation thermodynamics from simulation with a polarizable force field.

Authors:  Alan Grossfield; Pengyu Ren; Jay W Ponder
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

2.  Solving the hydration structure of the heaviest actinide aqua ion known: the californium(III) case.

Authors:  Elsa Galbis; Jorge Hernández-Cobos; Christophe den Auwer; Claire Le Naour; Dominique Guillaumont; Eric Simoni; Rafael R Pappalardo; Enrique Sánchez Marcos
Journal:  Angew Chem Int Ed Engl       Date:  2010-05-17       Impact factor: 15.336

3.  Ab Initio Extension of the AMOEBA Polarizable Force Field to Fe(2.).

Authors:  David Semrouni; William C Isley; Carine Clavaguéra; Jean-Pierre Dognon; Christopher J Cramer; Laura Gagliardi
Journal:  J Chem Theory Comput       Date:  2013-06-19       Impact factor: 6.006

4.  Gd(III) polyaminocarboxylate chelate: realistic many-body molecular dynamics simulations for molecular imaging applications.

Authors:  Carine Clavaguéra; Emmanuelle Sansot; Florent Calvo; Jean-Pierre Dognon
Journal:  J Phys Chem B       Date:  2006-07-06       Impact factor: 2.991

5.  Revised ionic radii of lanthanoid(III) ions in aqueous solution.

Authors:  Paola D'Angelo; Andrea Zitolo; Valentina Migliorati; Giovanni Chillemi; Magali Duvail; Pierre Vitorge; Sacha Abadie; Riccardo Spezia
Journal:  Inorg Chem       Date:  2011-04-15       Impact factor: 5.165

6.  Further insights in the ability of classical nonadditive potentials to model actinide ion-water interactions.

Authors:  Florent Réal; Michael Trumm; Bernd Schimmelpfennig; Michel Masella; Valérie Vallet
Journal:  J Comput Chem       Date:  2012-12-12       Impact factor: 3.376

7.  Solvation structure and ion complexation of La3+ in a 1 molal aqueous solution of lanthanum chloride.

Authors:  Sofia Díaz-Moreno; Silvia Ramos; Daniel T Bowron
Journal:  J Phys Chem A       Date:  2011-05-26       Impact factor: 2.781

8.  High-resolution analysis of Zn(2+) coordination in the alkaline phosphatase superfamily by EXAFS and x-ray crystallography.

Authors:  Elena Bobyr; Jonathan K Lassila; Helen I Wiersma-Koch; Timothy D Fenn; Jason J Lee; Ivana Nikolic-Hughes; Keith O Hodgson; Douglas C Rees; Britt Hedman; Daniel Herschlag
Journal:  J Mol Biol       Date:  2011-10-28       Impact factor: 5.469

9.  Hydration of lanthanoids(III) and actinoids(III): an experimental/theoretical saga.

Authors:  Paola D'Angelo; Riccardo Spezia
Journal:  Chemistry       Date:  2012-08-14       Impact factor: 5.236

10.  Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.

Authors:  In Suk Joung; Thomas E Cheatham
Journal:  J Phys Chem B       Date:  2008-07-02       Impact factor: 2.991

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  6 in total

1.  All-electron basis sets augmented with diffuse functions for He, Ca, Sr, Ba, and lanthanides: application in calculations of atomic and molecular properties.

Authors:  I B Ferreira; C T Campos; F E Jorge
Journal:  J Mol Model       Date:  2020-04-07       Impact factor: 1.810

2.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

3.  Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields.

Authors:  Louis Lagardère; Luc-Henri Jolly; Filippo Lipparini; Félix Aviat; Benjamin Stamm; Zhifeng F Jing; Matthew Harger; Hedieh Torabifard; G Andrés Cisneros; Michael J Schnieders; Nohad Gresh; Yvon Maday; Pengyu Y Ren; Jay W Ponder; Jean-Philip Piquemal
Journal:  Chem Sci       Date:  2017-11-27       Impact factor: 9.825

4.  Outer-Sphere Water Clusters Tune the Lanthanide Selectivity of Diglycolamides.

Authors:  Anna G Baldwin; Alexander S Ivanov; Neil J Williams; Ross J Ellis; Bruce A Moyer; Vyacheslav S Bryantsev; Jenifer C Shafer
Journal:  ACS Cent Sci       Date:  2018-06-14       Impact factor: 14.553

5.  Ion Association in Lanthanide Chloride Solutions.

Authors:  Aaron R Finney; Sébastien Lectez; Colin L Freeman; John H Harding; Stephen Stackhouse
Journal:  Chemistry       Date:  2019-05-30       Impact factor: 5.236

6.  Current Status of AMOEBA-IL: A Multipolar/Polarizable Force Field for Ionic Liquids.

Authors:  Erik Antonio Vázquez-Montelongo; José Enrique Vázquez-Cervantes; G Andrés Cisneros
Journal:  Int J Mol Sci       Date:  2020-01-21       Impact factor: 5.923

  6 in total

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