| Literature DB >> 25286337 |
Jixiang Zhang1, Jianhong Wu2, Xiulan Peng3, Jia Song1, Jun Wang1, Weiguo Dong1.
Abstract
BACKGROUND: Many studies have investigated the associations between the signal transducer and activator of transcription 3 (STAT3) in the susceptibility to ulcerative colitis (UC) and Crohn's disease (CD). However, the results remain inconsistent. This meta-analysis determined the risk of STAT3 rs744166 polymorphism-conferred UC and CD susceptibility.Entities:
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Year: 2014 PMID: 25286337 PMCID: PMC4186844 DOI: 10.1371/journal.pone.0109625
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1The screening process of studies.
Characteristics of the studies included in the meta-analysis.
| Study | Year | Country | Ethnicity | Study Design | Age of Onset | Genotyping Method | Sample Size | ||
| CD | UC | Control | |||||||
| Jung | 2012 | France | Multi-ethnicity | HB | Adult | SNP Array | 798 | — | 960 |
| Waterman | 2011 | Canada | Multi-ethnicity | HB | Multi-age | SNP Array | 1140 | 1230 | 1057 |
| Franke | 2008 | Germany | Caucasian | PB | Multi-age | SNPlex | 1845 | 1099 | 1791 |
| Amre | 2010 | Canada | Caucasian | HB | Child | Sequenom platform | 406 | — | 415 |
| Peter | 2011 | USA | Caucasian | PB | Multi-age | Taqman | 503 | — | 369 |
| Polgar | 2012 | Hungary | Caucasian | PB | Adult | PCR-RFLP | 309 | 307 | 496 |
| Danoy(Phase1) | 2010 | Australia | Caucasian | PB | Multi-age | SNP Array | 1230 | — | 1295 |
| Danoy(Phase2) | 2010 | Australia | Caucasian | PB | Multi-age | SNPlex | 1545 | — | 920 |
| Laukens | 2010 | Belgium | Caucasian | HB | Adult | SNP Array | 1071 | — | 693 |
| Ferguson | 2010 | New Zealand | Caucasian | PB | Multi-age | Taqman | 302 | — | 382 |
| Cénit | 2010 | Spain | Caucasian | HB | Adult | Taqman | 394 | 442 | 1692 |
| Henckaerts | 2009 | Belgium | Caucasian | HB | Multi-age | PCR-RFLP | 755 | — | 344 |
| Franke | 2008 | Germany | Multi-ethnicity | HB | Multi-age | SNP Array | — | 1166 | 777 |
Rs744166 polymorphism was in the Hardy-Weinberg equilibrium for controls.
Pooled analysis of the association between the STAT3 rs744166 polymorphisms with the risk of CD and UC.
| Disease | N | Comparison | Test of Association | Bonferroni | FDR | Test of Heterogeneity | Publication Bias | ||
| OR (95% CI) |
|
|
| ||||||
| CD | 11 | GA vs. GG | 1.14(1.05–1.24) | 0.00100 | 0.00500 | 0.00100 | 0.850 | 0 | 0.188 |
| AA vs. GG | 1.29(1.19–1.40) | <0.00001 | <0.00005 | <0.00001 | 0.230 | 22 | 0.292 | ||
| GA+AA vs. GG | 1.20(1.11–1.30) | <0.00001 | <0.00005 | <0.00001 | 0.510 | 0 | 0.240 | ||
| AA vs. GG+GA | 1.17(1.10–1.24) | <0.00001 | <0.00005 | <0.00001 | 0.430 | 1 | 0.399 | ||
| A vs. G | 1.13(1.09–1.18) | <0.00001 | <0.00005 | <0.00001 | 0.210 | 24 | 0.284 | ||
| UC | 5 | GA vs. GG | 1.14(1.01–1.29) | 0.04000 | 0.20000 | 0.04000 | 0.780 | 0 | 0.508 |
| AA vs. GG | 1.31(1.16–1.49) | <0.00010 | <0.00050 | <0.00017 | 0.160 | 40 | 0.825 | ||
| GA+AA vs. GG | 1.21(1.08–1.36) | 0.00100 | 0.00500 | 0.00125 | 0.400 | 1 | 0.647 | ||
| AA vs. GG+GA | 1.19(1.09–1.30) | <0.00010 | <0.00050 | <0.00017 | 0.190 | 34 | 0.776 | ||
| A vs. G | 1.15(1.08–1.22) | <0.00001 | <0.00005 | <0.00005 | 0.110 | 47 | 0.689 | ||
Bonferroni, P-value in Bonferroni testing; FDR, P-value in false discovery rate.
Subgroup analysis of the association between the STAT3 rs744166 polymorphisms and the risk of CD.
| Basis for grouping | Comparison | Subgroup | Test of Association | Bonferroni | FDR | Test of Heterogeneity | Heterogeneity Between Subgroups | |||
| OR (95% CI) |
|
|
|
|
| |||||
| Ethnicity | GA+AA vs. GG | Caucasian | 1.24(1.14–1.35) | <0.00001 | <0.00005 | <0.00001 | 0.620 | 0 | 0.080 | 66.6 |
| Multi-ethnic | 1.05(0.89–1.25) | 0.55000 | 1.00000 | 0.68750 | 0.950 | 0 | ||||
| A vs. G | Caucasian | 1.16(1.11–1.21) | <0.00001 | <0.00005 | <0.00001 | 0.380 | 6 | 0.030 | 79.1 | |
| Multi-ethnic | 1.04(0.95–1.13) | 0.44000 | 1.00000 | 0.68750 | 0.910 | 0 | ||||
| Study Design | GA+AA vs. GG | HB | 1.21(1.08–1.36) | 0.00100 | 0.00500 | 0.00167 | 0.270 | 22 | 0.860 | 0 |
| PB | 1.19(1.08–1.32) | 0.00060 | 0.00300 | 0.00075 | 0.580 | 0 | ||||
| A vs. G | HB | 1.12(1.06–1.19) | 0.00020 | 0.00100 | 0.00050 | 0.200 | 32 | 0.640 | 0 | |
| PB | 1.14(1.08–1.21) | <0.00001 | <0.00005 | 0.00003 | 0.230 | 27 | ||||
| Age of Onset | GA+AA vs. GG | Child | 1.41(0.98–2.02) | 0.06000 | 0.30000 | 0.07500 | — | — | 0.670 | 0 |
| Adult | 1.18(1.02–1.36) | 0.03000 | 0.15000 | 0.05000 | 0.680 | 0 | ||||
| Multi-age | 1.20(1.09–1.31) | 0.00010 | 0.00050 | 0.00013 | 0.250 | 24 | ||||
| A vs. G | Child | 1.27(1.05–1.55) | 0.02000 | 0.10000 | 0.05000 | — | — | 0.400 | 0 | |
| Adult | 1.10(1.02–1.19) | 0.01000 | 0.05000 | 0.02500 | 0.640 | 0 | ||||
| Multi-age | 1.14(1.08–1.19) | <0.00001 | <0.00005 | <0.00002 | 0.090 | 45 | ||||
| Genotyping Methods | GA+AA vs. GG | PCR-RFLP | 1.37(1.05–1.78) | 0.02000 | 0.10000 | 0.03333 | 0.160 | 50 | 0.660 | 0 |
| SNP Array | 1.15(1.03–1.29) | 0.02000 | 0.10000 | 0.02500 | 0.550 | 0 | ||||
| Taqman | 1.25(1.02–1.55) | 0.04000 | 0.20000 | 0.06667 | 0.530 | 0 | ||||
| SNPlex | 1.18(1.03–1.35) | 0.02000 | 0.10000 | 0.02500 | 0.130 | 57 | ||||
| A vs. G | PCR-RFLP | 1.19(1.04–1.36) | 0.01000 | 0.05000 | 0.02500 | 0.200 | 39 | 0.790 | 0 | |
| SNP Array | 1.11(1.04–1.18) | 0.00200 | 0.01000 | 0.00500 | 0.280 | 22 | ||||
| Taqman | 1.14(1.03–1.27) | 0.02000 | 0.10000 | 0.05000 | 0.200 | 37 | ||||
| SNPlex | 1.14(1.06–1.22) | 0.00070 | 0.00350 | 0.00250 | 0.070 | 69 | ||||
| Number of patients | GA+AA vs. GG | Small size (<1000) | 1.24(1.02–1.50) | 0.03000 | 0.15000 | 0.03750 | 0.580 | 0 | 0.720 | 0 |
| Moderate size (1000–2500) | 1.23(1.10–1.36) | 0.00010 | 0.00050 | 0.00017 | 0.250 | 24 | ||||
| Large size (>2500) | 1.15(1.00–1.31) | 0.04000 | 0.20000 | 0.05000 | 0.320 | 0 | ||||
| A vs. G | Small size (<1000) | 1.17(1.06–1.30) | 0.00200 | 0.01000 | 0.00833 | 0.220 | 31 | 0.720 | 0 | |
| Moderate size (1000–2500) | 1.13(1.07–1.20) | <0.00010 | <0.00050 | <0.00017 | 0.150 | 39 | ||||
| Large size (>2500) | 1.11(1.04–1.20) | 0.00300 | 0.01500 | 0.01167 | 0.270 | 19 | ||||
HB, hospital-based; PB, population-based; Bonferroni, P-value in Bonferroni testing; FDR, P-value in false discovery rate.
Figure 2Meta-analysis of the association between STAT3 rs744166 polymorphism and CD for GA+AA vs. GG.
Figure 3Subgroup analysis of the association between STAT3 rs744166 polymorphism and CD by ethnicity for GA+AA vs. GG.
Subgroup analysis of the association between the STAT3 rs744166 polymorphisms and the risk of UC.
| Basis for grouping | Comparison | Subgroup | Test of Association | Bonferroni | FDR | Test of Heterogeneity | Heterogeneity Between Subgroups | |||
| OR (95% CI) |
|
|
|
|
| |||||
| Ethnicity | GA+AA vs. GG | Caucasian | 1.33(1.13–1.56) | 0.00050 | 0.00250 | 0.00063 | 0.800 | 0 | 0.1000 | 63.8 |
| Multi-ethnic | 1.09(0.92–1.29) | 0.32000 | 1.00000 | 0.40000 | 0.360 | 0 | ||||
| A vs. G | Caucasian | 1.22(1.13–1.33) | <0.00001 | <0.00005 | <0.000023 | 0.580 | 0 | 0.020 | 80.6 | |
| Multi-ethnic | 1.06(0.97–1.16) | 0.17000 | 0.85000 | 0.36667 | 0.240 | 27 | ||||
| Study Design | GA+AA vs. GG | HB | 1.14(0.98–1.32) | 0.08000 | 0.40000 | 0.10000 | 0.400 | 0 | 0.180 | 44.0 |
| PB | 1.34(1.11–1.63) | 0.00300 | 0.01500 | 0.00017 | 0.520 | 0 | ||||
| A vs. G | HB | 1.09(1.01–1.18) | 0.03000 | 0.15000 | 0.07500 | 0.280 | 22 | 0.040 | 76.9 | |
| PB | 1.24(1.13–1.37) | <0.00001 | <0.00005 | <0.00005 | 0.400 | 0 | ||||
| Age of Onset | GA+AA vs. GG | Adult | 1.37(1.07–1.75) | 0.01000 | 0.05000 | 0.01250 | 0.540 | 0 | 0.280 | 14.8 |
| Multi-age | 1.17(1.02–1.34) | 0.02000 | 0.10000 | 0.02500 | 0.290 | 19 | ||||
| A vs. G | Adult | 1.23(1.09–1.39) | 0.00100 | 0.00500 | 0.00500 | 0.300 | 7 | 0.200 | 39.0 | |
| Multi-age | 1.12(1.05–1.20) | 0.00100 | 0.00500 | 0.00500 | 0.090 | 59 | ||||
| Genotyping Methods | GA+AA vs. GG | PCR-RFLP | 1.53(0.99–2.38) | 0.06000 | 0.30000 | 0.07500 | — | — | 0.360 | 6.5 |
| SNP Array | 1.09(0.92–1.29) | 0.32000 | 1.00000 | 0.40000 | 0.360 | 0 | ||||
| Taqman | 1.30(0.96–1.75) | 0.09000 | 0.45000 | 0.12500 | — | — | ||||
| SNPlex | 1.30(1.05–1.61) | 0.02000 | 0.10000 | 0.02500 | — | — | ||||
| A vs. G | PCR-RFLP | 1.35(1.09–1.67) | 0.00600 | 0.03000 | 0.01667 | — | — | 0.140 | 45.0 | |
| SNP Array | 1.06(0.96–1.18) | 0.25000 | 1.00000 | 0.40000 | 0.240 | 27 | ||||
| Taqman | 1.17(1.01–1.37) | 0.04000 | 0.20000 | 0.10000 | — | — | ||||
| SNPlex | 1.22(1.09–1.36) | 0.00040 | 0.00002 | 0.00167 | — | — | ||||
| Number of patients | GA+AA vs. GG | Small size (<1000) | 1.53(0.99–2.38) | 0.06000 | 0.30000 | 0.01667 | — | — | 0.280 | 13.7 |
| Large size (>1000) | 1.19(1.06–1.34) | 0.00500 | 0.02500 | 0.00625 | 0.410 | 0 | ||||
| A vs. G | Small size (<1000) | 1.35(1.09–1.67) | 0.00600 | 0.03000 | 0.01667 | — | — | 0.120 | 57.8 | |
| Large size (>1000) | 1.13(1.04–1.23) | 0.00500 | 0.02500 | 0.00625 | 0.160 | 42 | ||||
HB, hospital-based; PB, population-based; Bonferroni, P-value in Bonferroni testing; FDR, P-value in false discovery rate.
Figure 4Meta-analysis of the association between STAT3 rs744166 polymorphism and UC for GA+AA vs. GG.
Figure 5Subgroup analysis of the association between STAT3 rs744166 polymorphism and UC by age of onset for GA+AA vs. GG.