Literature DB >> 25274366

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally.

Kelly S Ramirez1, Jonathan W Leff2, Albert Barberán3, Scott Thomas Bates4, Jason Betley5, Thomas W Crowther6, Eugene F Kelly7, Emily E Oldfield6, E Ashley Shaw8, Christopher Steenbock9, Mark A Bradford6, Diana H Wall10, Noah Fierer11.   

Abstract

Soil biota play key roles in the functioning of terrestrial ecosystems, however, compared to our knowledge of above-ground plant and animal diversity, the biodiversity found in soils remains largely uncharacterized. Here, we present an assessment of soil biodiversity and biogeographic patterns across Central Park in New York City that spanned all three domains of life, demonstrating that even an urban, managed system harbours large amounts of undescribed soil biodiversity. Despite high variability across the Park, below-ground diversity patterns were predictable based on soil characteristics, with prokaryotic and eukaryotic communities exhibiting overlapping biogeographic patterns. Further, Central Park soils harboured nearly as many distinct soil microbial phylotypes and types of soil communities as we found in biomes across the globe (including arctic, tropical and desert soils). This integrated cross-domain investigation highlights that the amount and patterning of novel and uncharacterized diversity at a single urban location matches that observed across natural ecosystems spanning multiple biomes and continents.
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  16S rRNA gene; 18S rRNA gene; Archaea; Bacteria; Eukarya; soil biodiversity

Mesh:

Substances:

Year:  2014        PMID: 25274366      PMCID: PMC4213626          DOI: 10.1098/rspb.2014.1988

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  40 in total

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Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

4.  UPARSE: highly accurate OTU sequences from microbial amplicon reads.

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Journal:  Nat Methods       Date:  2013-08-18       Impact factor: 28.547

5.  Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity.

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Journal:  ISME J       Date:  2009-12-10       Impact factor: 10.302

Review 6.  The mycorrhiza helper bacteria revisited.

Authors:  P Frey-Klett; J Garbaye; M Tarkka
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7.  A species definition for the modern synthesis.

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Review 8.  The generation and maintenance of diversity in microbial communities.

Authors:  Noah Fierer; Jay T Lennon
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  69 in total

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2.  Spatial scale drives patterns in soil bacterial diversity.

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4.  Local-global overlap in diversity informs mechanisms of bacterial biogeography.

Authors:  Joshua A Livermore; Stuart E Jones
Journal:  ISME J       Date:  2015-04-07       Impact factor: 10.302

5.  Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity.

Authors:  Zachary Charlop-Powers; Clara C Pregitzer; Christophe Lemetre; Melinda A Ternei; Jeffrey Maniko; Bradley M Hover; Paula Y Calle; Krista L McGuire; Jeanne Garbarino; Helen M Forgione; Sarah Charlop-Powers; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-28       Impact factor: 11.205

6.  Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils.

Authors:  Aman S Gill; Angela Lee; Krista L McGuire
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

7.  News Feature: Crucial role of belowground biodiversity.

Authors:  John Carey
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-12       Impact factor: 11.205

8.  Evaluating community-environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly.

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9.  Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm.

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Authors:  Jonathan W Leff; Stuart E Jones; Suzanne M Prober; Albert Barberán; Elizabeth T Borer; Jennifer L Firn; W Stanley Harpole; Sarah E Hobbie; Kirsten S Hofmockel; Johannes M H Knops; Rebecca L McCulley; Kimberly La Pierre; Anita C Risch; Eric W Seabloom; Martin Schütz; Christopher Steenbock; Carly J Stevens; Noah Fierer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

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