Literature DB >> 26283343

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe.

Jonathan W Leff1, Stuart E Jones2, Suzanne M Prober3, Albert Barberán4, Elizabeth T Borer5, Jennifer L Firn6, W Stanley Harpole7, Sarah E Hobbie5, Kirsten S Hofmockel8, Johannes M H Knops9, Rebecca L McCulley10, Kimberly La Pierre11, Anita C Risch12, Eric W Seabloom13, Martin Schütz12, Christopher Steenbock14, Carly J Stevens15, Noah Fierer16.   

Abstract

Soil microorganisms are critical to ecosystem functioning and the maintenance of soil fertility. However, despite global increases in the inputs of nitrogen (N) and n>an class="Chemical">phosphorus (P) to ecosystems due to human activities, we lack a predictive understanding of how microbial communities respond to elevated nutrient inputs across environmental gradients. Here we used high-throughput sequencing of marker genes to elucidate the responses of soil fungal, archaeal, and bacterial communities using an N and P addition experiment replicated at 25 globally distributed grassland sites. We also sequenced metagenomes from a subset of the sites to determine how the functional attributes of bacterial communities change in response to elevated nutrients. Despite strong compositional differences across sites, microbial communities shifted in a consistent manner with N or P additions, and the magnitude of these shifts was related to the magnitude of plant community responses to nutrient inputs. Mycorrhizal fungi and methanogenic archaea decreased in relative abundance with nutrient additions, as did the relative abundances of oligotrophic bacterial taxa. The metagenomic data provided additional evidence for this shift in bacterial life history strategies because nutrient additions decreased the average genome sizes of the bacterial community members and elicited changes in the relative abundances of representative functional genes. Our results suggest that elevated N and P inputs lead to predictable shifts in the taxonomic and functional traits of soil microbial communities, including increases in the relative abundances of faster-growing, copiotrophic bacterial taxa, with these shifts likely to impact belowground ecosystems worldwide.

Entities:  

Keywords:  fertilization; shotgun metagenomics; soil bacteria; soil ecology; soil fungi

Mesh:

Substances:

Year:  2015        PMID: 26283343      PMCID: PMC4568213          DOI: 10.1073/pnas.1508382112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

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Journal:  Mycologia       Date:  2006 Nov-Dec       Impact factor: 2.696

3.  UPARSE: highly accurate OTU sequences from microbial amplicon reads.

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Journal:  Nat Methods       Date:  2013-08-18       Impact factor: 28.547

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Authors:  Bart Haegeman; Jérôme Hamelin; John Moriarty; Peter Neal; Jonathan Dushoff; Joshua S Weitz
Journal:  ISME J       Date:  2013-02-14       Impact factor: 10.302

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Journal:  Nature       Date:  2014-03-09       Impact factor: 49.962

6.  Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria.

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Journal:  Ecol Lett       Date:  2014-04-22       Impact factor: 9.492

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Authors:  Linda T A Van Diepen; Erik A Lilleskov; Kurt S Pregitzer; R Michael Miller
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Authors:  David S LeBauer; Kathleen K Treseder
Journal:  Ecology       Date:  2008-02       Impact factor: 5.499

9.  Loss of plant species after chronic low-level nitrogen deposition to prairie grasslands.

Authors:  Christopher M Clark; David Tilman
Journal:  Nature       Date:  2008-02-07       Impact factor: 49.962

10.  Long-term nitrogen amendment alters the diversity and assemblage of soil bacterial communities in tallgrass prairie.

Authors:  Joseph D Coolon; Kenneth L Jones; Timothy C Todd; John M Blair; Michael A Herman
Journal:  PLoS One       Date:  2013-06-28       Impact factor: 3.240

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  167 in total

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Authors:  Chris M Yeager; La Verne Gallegos-Graves; John Dunbar; Cedar N Hesse; Hajnalka Daligault; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

2.  Land-use intensification causes multitrophic homogenization of grassland communities.

Authors:  Martin M Gossner; Thomas M Lewinsohn; Tiemo Kahl; Fabrice Grassein; Steffen Boch; Daniel Prati; Klaus Birkhofer; Swen C Renner; Johannes Sikorski; Tesfaye Wubet; Hartmut Arndt; Vanessa Baumgartner; Stefan Blaser; Nico Blüthgen; Carmen Börschig; Francois Buscot; Tim Diekötter; Leonardo Ré Jorge; Kirsten Jung; Alexander C Keyel; Alexandra-Maria Klein; Sandra Klemmer; Jochen Krauss; Markus Lange; Jörg Müller; Jörg Overmann; Esther Pašalić; Caterina Penone; David J Perović; Oliver Purschke; Peter Schall; Stephanie A Socher; Ilja Sonnemann; Marco Tschapka; Teja Tscharntke; Manfred Türke; Paul Christiaan Venter; Christiane N Weiner; Michael Werner; Volkmar Wolters; Susanne Wurst; Catrin Westphal; Markus Fischer; Wolfgang W Weisser; Eric Allan
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

3.  Phylogenetic-scale disparities in the soil microbial diversity-ecosystem functioning relationship.

Authors:  Marta Goberna; Miguel Verdú
Journal:  ISME J       Date:  2018-06-07       Impact factor: 10.302

4.  Determination of Microbial Diversity and Community Composition in Unfermented and Fermented Washing Rice Water by High-Throughput Sequencing.

Authors:  Youlin Chen; Haiming Chen; Qiuping Zhong; Yong-Huan Yun; Weijun Chen; Wenxue Chen
Journal:  Curr Microbiol       Date:  2021-03-11       Impact factor: 2.188

5.  Historical Nitrogen Deposition and Straw Addition Facilitate the Resistance of Soil Multifunctionality to Drying-Wetting Cycles.

Authors:  Gongwen Luo; Tingting Wang; Kaisong Li; Ling Li; Junwei Zhang; Shiwei Guo; Ning Ling; Qirong Shen
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

6.  Rhizobacterial Community Structures Associated with Native Plants Grown in Chilean Extreme Environments.

Authors:  Milko A Jorquera; Fumito Maruyama; Andrew V Ogram; Oscar U Navarrete; Lorena M Lagos; Nitza G Inostroza; Jacquelinne J Acuña; Joaquín I Rilling; María de La Luz Mora
Journal:  Microb Ecol       Date:  2016-07-13       Impact factor: 4.552

7.  Rainforest Conversion to Rubber Plantation May Not Result in Lower Soil Diversity of Bacteria, Fungi, and Nematodes.

Authors:  Dorsaf Kerfahi; Binu M Tripathi; Ke Dong; Rusea Go; Jonathan M Adams
Journal:  Microb Ecol       Date:  2016-05-25       Impact factor: 4.552

8.  Quantifying human impact on Earth's microbiome.

Authors:  Stephen B Pointing; Noah Fierer; Gavin J D Smith; Peter D Steinberg; Martin Wiedmann
Journal:  Nat Microbiol       Date:  2016-08-26       Impact factor: 17.745

9.  Contrasting Patterns of Functional Diversity in Coffee Root Fungal Communities Associated with Organic and Conventionally Managed Fields.

Authors:  Elizabeth C Sternhagen; Katie L Black; Eliza D L Hartmann; W Gaya Shivega; Peter G Johnson; Riley D McGlynn; Logan C Schmaltz; Rebecca J Asheim Keller; Stefanie N Vink; Laura Aldrich-Wolfe
Journal:  Appl Environ Microbiol       Date:  2020-05-19       Impact factor: 4.792

10.  Vulnerability and resistance in the spatial heterogeneity of soil microbial communities under resource additions.

Authors:  Kelly Gravuer; Anu Eskelinen; Joy B Winbourne; Susan P Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-12       Impact factor: 11.205

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