Jonathan W Leff1, Stuart E Jones2, Suzanne M Prober3, Albert Barberán4, Elizabeth T Borer5, Jennifer L Firn6, W Stanley Harpole7, Sarah E Hobbie5, Kirsten S Hofmockel8, Johannes M H Knops9, Rebecca L McCulley10, Kimberly La Pierre11, Anita C Risch12, Eric W Seabloom13, Martin Schütz12, Christopher Steenbock14, Carly J Stevens15, Noah Fierer16. 1. Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309; Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309; 2. Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556; 3. Commonwealth Scientific and Industrial Research Organisation Land and Water Flagship, Wembley, WA 6913, Australia; 4. Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309; 5. Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108; 6. School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, QLD 4001, Australia; 7. Department of Physiological Diversity, Helmholtz Center for Environmental Research UFZ, 04318 Leipzig, Germany; German Centre for Integrative Biodiversity Research Halle-Jena-Leipzig, D-04103 Leipzig, Germany; Institute of Biology, Martin Luther University Halle-Wittenberg, 06108 Halle (Saale), Germany; 8. Ecology, Evolution, and Organismal Biology Department, Iowa State University, Ames, IA 50011; 9. School of Biological Sciences, University of Nebraska, Lincoln, NE 68588; 10. Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546; 11. Department of Integrative Biology, University of California, Berkeley, CA 94720; 12. Community Ecology, Swiss Federal Institute for Forest, Snow and Landscape Research, 8903 Birmensdorf, Switzerland; 13. Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108; 14. Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309; 15. Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, United Kingdom. 16. Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309; Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309; noah.fierer@colorado.edu.
Abstract
Soil microorganisms are critical to ecosystem functioning and the maintenance of soil fertility. However, despite global increases in the inputs of nitrogen (N) and phosphorus (P) to ecosystems due to human activities, we lack a predictive understanding of how microbial communities respond to elevated nutrient inputs across environmental gradients. Here we used high-throughput sequencing of marker genes to elucidate the responses of soil fungal, archaeal, and bacterial communities using an N and P addition experiment replicated at 25 globally distributed grassland sites. We also sequenced metagenomes from a subset of the sites to determine how the functional attributes of bacterial communities change in response to elevated nutrients. Despite strong compositional differences across sites, microbial communities shifted in a consistent manner with N or P additions, and the magnitude of these shifts was related to the magnitude of plant community responses to nutrient inputs. Mycorrhizal fungi and methanogenic archaea decreased in relative abundance with nutrient additions, as did the relative abundances of oligotrophic bacterial taxa. The metagenomic data provided additional evidence for this shift in bacterial life history strategies because nutrient additions decreased the average genome sizes of the bacterial community members and elicited changes in the relative abundances of representative functional genes. Our results suggest that elevated N and P inputs lead to predictable shifts in the taxonomic and functional traits of soil microbial communities, including increases in the relative abundances of faster-growing, copiotrophic bacterial taxa, with these shifts likely to impact belowground ecosystems worldwide.
Soil microorganisms are critical to ecosystem functioning and the maintenance of soil fertility. However, despite global increases in the inputs of nitrogen (N) and n>an class="Chemical">phosphorus (P) to ecosystems due to human activities, we lack a predictive understanding of how microbial communities respond to elevated nutrient inputs across environmental gradients. Here we used high-throughput sequencing of marker genes to elucidate the responses of soil fungal, archaeal, and bacterial communities using an N and P addition experiment replicated at 25 globally distributed grassland sites. We also sequenced metagenomes from a subset of the sites to determine how the functional attributes of bacterial communities change in response to elevated nutrients. Despite strong compositional differences across sites, microbial communities shifted in a consistent manner with N or P additions, and the magnitude of these shifts was related to the magnitude of plant community responses to nutrient inputs. Mycorrhizal fungi and methanogenic archaea decreased in relative abundance with nutrient additions, as did the relative abundances of oligotrophic bacterial taxa. The metagenomic data provided additional evidence for this shift in bacterial life history strategies because nutrient additions decreased the average genome sizes of the bacterial community members and elicited changes in the relative abundances of representative functional genes. Our results suggest that elevated N and P inputs lead to predictable shifts in the taxonomic and functional traits of soil microbial communities, including increases in the relative abundances of faster-growing, copiotrophic bacterial taxa, with these shifts likely to impact belowground ecosystems worldwide.
Authors: Elizabeth T Borer; Eric W Seabloom; Daniel S Gruner; W Stanley Harpole; Helmut Hillebrand; Eric M Lind; Peter B Adler; Juan Alberti; T Michael Anderson; Jonathan D Bakker; Lori Biederman; Dana Blumenthal; Cynthia S Brown; Lars A Brudvig; Yvonne M Buckley; Marc Cadotte; Chengjin Chu; Elsa E Cleland; Michael J Crawley; Pedro Daleo; Ellen I Damschen; Kendi F Davies; Nicole M DeCrappeo; Guozhen Du; Jennifer Firn; Yann Hautier; Robert W Heckman; Andy Hector; Janneke HilleRisLambers; Oscar Iribarne; Julia A Klein; Johannes M H Knops; Kimberly J La Pierre; Andrew D B Leakey; Wei Li; Andrew S MacDougall; Rebecca L McCulley; Brett A Melbourne; Charles E Mitchell; Joslin L Moore; Brent Mortensen; Lydia R O'Halloran; John L Orrock; Jesús Pascual; Suzanne M Prober; David A Pyke; Anita C Risch; Martin Schuetz; Melinda D Smith; Carly J Stevens; Lauren L Sullivan; Ryan J Williams; Peter D Wragg; Justin P Wright; Louie H Yang Journal: Nature Date: 2014-03-09 Impact factor: 49.962
Authors: Albert Barberán; Kelly S Ramirez; Jonathan W Leff; Mark A Bradford; Diana H Wall; Noah Fierer Journal: Ecol Lett Date: 2014-04-22 Impact factor: 9.492
Authors: Chris M Yeager; La Verne Gallegos-Graves; John Dunbar; Cedar N Hesse; Hajnalka Daligault; Cheryl R Kuske Journal: Appl Environ Microbiol Date: 2017-03-02 Impact factor: 4.792
Authors: Martin M Gossner; Thomas M Lewinsohn; Tiemo Kahl; Fabrice Grassein; Steffen Boch; Daniel Prati; Klaus Birkhofer; Swen C Renner; Johannes Sikorski; Tesfaye Wubet; Hartmut Arndt; Vanessa Baumgartner; Stefan Blaser; Nico Blüthgen; Carmen Börschig; Francois Buscot; Tim Diekötter; Leonardo Ré Jorge; Kirsten Jung; Alexander C Keyel; Alexandra-Maria Klein; Sandra Klemmer; Jochen Krauss; Markus Lange; Jörg Müller; Jörg Overmann; Esther Pašalić; Caterina Penone; David J Perović; Oliver Purschke; Peter Schall; Stephanie A Socher; Ilja Sonnemann; Marco Tschapka; Teja Tscharntke; Manfred Türke; Paul Christiaan Venter; Christiane N Weiner; Michael Werner; Volkmar Wolters; Susanne Wurst; Catrin Westphal; Markus Fischer; Wolfgang W Weisser; Eric Allan Journal: Nature Date: 2016-11-30 Impact factor: 49.962
Authors: Milko A Jorquera; Fumito Maruyama; Andrew V Ogram; Oscar U Navarrete; Lorena M Lagos; Nitza G Inostroza; Jacquelinne J Acuña; Joaquín I Rilling; María de La Luz Mora Journal: Microb Ecol Date: 2016-07-13 Impact factor: 4.552
Authors: Stephen B Pointing; Noah Fierer; Gavin J D Smith; Peter D Steinberg; Martin Wiedmann Journal: Nat Microbiol Date: 2016-08-26 Impact factor: 17.745
Authors: Elizabeth C Sternhagen; Katie L Black; Eliza D L Hartmann; W Gaya Shivega; Peter G Johnson; Riley D McGlynn; Logan C Schmaltz; Rebecca J Asheim Keller; Stefanie N Vink; Laura Aldrich-Wolfe Journal: Appl Environ Microbiol Date: 2020-05-19 Impact factor: 4.792