Literature DB >> 25271480

Single-cell technologies sharpen up mammalian stem cell research.

Philipp S Hoppe1, Daniel L Coutu1, Timm Schroeder1.   

Abstract

Analysis of the mechanisms underlying cell fates requires the molecular quantification of cellular features. Classical techniques use population average readouts at single time points. However, these approaches mask cellular heterogeneity and dynamics and are limited for studying rare and heterogeneous cell populations like stem cells. Techniques for single-cell analyses, ideally allowing non-invasive quantification of molecular dynamics and cellular behaviour over time, are required for studying stem cells. Here, we review the development and application of these techniques to stem cell research.

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Year:  2014        PMID: 25271480     DOI: 10.1038/ncb3042

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  132 in total

1.  Fertilization of rabbit ova in vitro.

Authors:  M C CHANG
Journal:  Nature       Date:  1959-08-08       Impact factor: 49.962

2.  Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis.

Authors:  Chang-Deng Hu; Tom K Kerppola
Journal:  Nat Biotechnol       Date:  2003-04-14       Impact factor: 54.908

3.  Nano-flares: probes for transfection and mRNA detection in living cells.

Authors:  Dwight S Seferos; David A Giljohann; Haley D Hill; Andrew E Prigodich; Chad A Mirkin
Journal:  J Am Chem Soc       Date:  2007-11-23       Impact factor: 15.419

Review 4.  Stem cell states, fates, and the rules of attraction.

Authors:  Tariq Enver; Martin Pera; Carsten Peterson; Peter W Andrews
Journal:  Cell Stem Cell       Date:  2009-05-08       Impact factor: 24.633

5.  Biallelic expression of nanog protein in mouse embryonic stem cells.

Authors:  Adam Filipczyk; Konstantinos Gkatzis; Jun Fu; Philipp S Hoppe; Heiko Lickert; Konstantinos Anastassiadis; Timm Schroeder
Journal:  Cell Stem Cell       Date:  2013-07-03       Impact factor: 24.633

6.  Dissecting T cell lineage relationships by cellular barcoding.

Authors:  Koen Schepers; Erwin Swart; Jeroen W J van Heijst; Carmen Gerlach; Maria Castrucci; Daoud Sie; Mike Heimerikx; Arno Velds; Ron M Kerkhoven; Ramon Arens; Ton N M Schumacher
Journal:  J Exp Med       Date:  2008-09-22       Impact factor: 14.307

7.  Endogenous bone marrow MSCs are dynamic, fate-restricted participants in bone maintenance and regeneration.

Authors:  Dongsu Park; Joel A Spencer; Bong Ihn Koh; Tatsuya Kobayashi; Joji Fujisaki; Thomas L Clemens; Charles P Lin; Henry M Kronenberg; David T Scadden
Journal:  Cell Stem Cell       Date:  2012-03-02       Impact factor: 24.633

Review 8.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

9.  Lineage tracing reveals Lgr5+ stem cell activity in mouse intestinal adenomas.

Authors:  Arnout G Schepers; Hugo J Snippert; Daniel E Stange; Maaike van den Born; Johan H van Es; Marc van de Wetering; Hans Clevers
Journal:  Science       Date:  2012-08-01       Impact factor: 47.728

10.  An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis.

Authors:  Kazuki Kurimoto; Yukihiro Yabuta; Yasuhide Ohinata; Yukiko Ono; Kenichiro D Uno; Rikuhiro G Yamada; Hiroki R Ueda; Mitinori Saitou
Journal:  Nucleic Acids Res       Date:  2006-03-17       Impact factor: 16.971

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  42 in total

1.  Network plasticity of pluripotency transcription factors in embryonic stem cells.

Authors:  Adam Filipczyk; Carsten Marr; Simon Hastreiter; Justin Feigelman; Michael Schwarzfischer; Philipp S Hoppe; Dirk Loeffler; Konstantinos D Kokkaliaris; Max Endele; Bernhard Schauberger; Oliver Hilsenbeck; Stavroula Skylaki; Jan Hasenauer; Konstantinos Anastassiadis; Fabian J Theis; Timm Schroeder
Journal:  Nat Cell Biol       Date:  2015-09-21       Impact factor: 28.824

Review 2.  The niche in single-cell technologies.

Authors:  Giacomo Donati
Journal:  Immunol Cell Biol       Date:  2015-12-22       Impact factor: 5.126

3.  A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations.

Authors:  Mikael N E Sommarin; Rebecca Warfvinge; Fatemeh Safi; Göran Karlsson
Journal:  J Vis Exp       Date:  2018-10-25       Impact factor: 1.355

4.  Cyclic Immunofluorescence (CycIF), A Highly Multiplexed Method for Single-cell Imaging.

Authors:  Jia-Ren Lin; Mohammad Fallahi-Sichani; Jia-Yun Chen; Peter K Sorger
Journal:  Curr Protoc Chem Biol       Date:  2016-12-07

5.  Tipping the balance toward trophoblast development.

Authors:  Michael J Soares; Jay L Vivian
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-26       Impact factor: 11.205

6.  Software tools for single-cell tracking and quantification of cellular and molecular properties.

Authors:  Oliver Hilsenbeck; Michael Schwarzfischer; Stavroula Skylaki; Bernhard Schauberger; Philipp S Hoppe; Dirk Loeffler; Konstantinos D Kokkaliaris; Simon Hastreiter; Eleni Skylaki; Adam Filipczyk; Michael Strasser; Felix Buggenthin; Justin S Feigelman; Jan Krumsiek; Adrianus J J van den Berg; Max Endele; Martin Etzrodt; Carsten Marr; Fabian J Theis; Timm Schroeder
Journal:  Nat Biotechnol       Date:  2016-07-12       Impact factor: 54.908

7.  Investigation of Optimized Treatment Conditions for Acoustic-Transfection Technique for Intracellular Delivery of Macromolecules.

Authors:  Min Gon Kim; Sangpil Yoon; Chi Tat Chiu; K Kirk Shung
Journal:  Ultrasound Med Biol       Date:  2017-12-25       Impact factor: 2.998

Review 8.  Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots.

Authors:  Carsten Marr; Joseph X Zhou; Sui Huang
Journal:  Curr Opin Biotechnol       Date:  2016-05-23       Impact factor: 9.740

Review 9.  Deconstructing and reconstructing the mouse and human early embryo.

Authors:  Marta N Shahbazi; Magdalena Zernicka-Goetz
Journal:  Nat Cell Biol       Date:  2018-07-23       Impact factor: 28.824

Review 10.  High resolution laser mass spectrometry bioimaging.

Authors:  Kermit K Murray; Chinthaka A Seneviratne; Suman Ghorai
Journal:  Methods       Date:  2016-03-10       Impact factor: 3.608

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