| Literature DB >> 25264385 |
A Giraldo1, J Gené1, D A Sutton2, H Madrid3, J Cano1, P W Crous3, J Guarro1.
Abstract
Numerous members of Ascomycota and Basidiomycota produce only poorly differentiated arthroconidial asexual morphs in culture. These arthroconidial fungi are grouped in genera where the asexual-sexual connections and their taxonomic circumscription are poorly known. In the present study we explored the phylogenetic relationships of two of these ascomycetous genera, Arthrographis and Arthropsis. Analysis of D1/D2 sequences of all species of both genera revealed that both are polyphyletic, with species being accommodated in different orders and classes. Because genetic variability was detected among reference strains and fresh isolates resembling the genus Arthrographis, we carried out a detailed phenotypic and phylogenetic analysis based on sequence data of the ITS region, actin and chitin synthase genes. Based on these results, four new species are recognised, namely Arthrographis chlamydospora, A. curvata, A. globosa and A. longispora. Arthrographis chlamydospora is distinguished by its cerebriform colonies, branched conidiophores, cuboid arthroconidia and terminal or intercalary globose to subglobose chlamydospores. Arthrographis curvata produced both sexual and asexual morphs, and is characterised by navicular ascospores and dimorphic conidia, namely cylindrical arthroconidia and curved, cashewnut-shaped conidia formed laterally on vegetative hyphae. Arthrographis globosa produced membranous colonies, but is mainly characterised by doliiform to globose arthroconidia. Arthrographis longispora also produces membranous colonies, but has poorly differentiated conidiophores and long arthroconidia. Morphological variants are described for A. kalrae and our results also revealed that Eremomyces langeronii and A. kalrae, traditionally considered the sexual and asexual morphs of the same species, are not conspecific.Entities:
Keywords: Arthrographis; Arthropsis; Eremomyces; arthroconidial fungi; phylogeny; taxonomy
Year: 2014 PMID: 25264385 PMCID: PMC4150071 DOI: 10.3767/003158514X680207
Source DB: PubMed Journal: Persoonia ISSN: 0031-5850 Impact factor: 11.051
Strains included in this study.
| Species | Strains | Origin | Previous identification | GenBank accession no. | |||
|---|---|---|---|---|---|---|---|
| 28S rDNA | ITS | ||||||
| – | Unknown, Sweden | AY853354 | – | – | – | ||
| ATCC 18187 T | Human, unknown | AY176704 | – | – | – | ||
| NRRL 5141 T | Soil, Honduras | – | – | – | – | ||
| CBS 156.77 | Skin lesion in dog, USA | AB040696 | – | – | – | ||
| CBS 721.68 T | Grass, United Kingdom | AY176709 | – | – | – | ||
| BCC 3520 | On wooden test block ( | DQ341102 | – | – | – | ||
| BCC 3543 | On wooden test block ( | DQ341101 | – | – | – | ||
| CBS 324.70 T | Decayed wood, Canada | FJ358274 | – | – | – | ||
| CBS 348.71 T | Unknown, Central African Republic | AB075352 | – | – | – | ||
| UAMH 2937 | Single ascospore isolate from a gymnothecium on soil, unknown | AB075326 | – | – | – | ||
| CBS 272.66 T | Soil, USA | AB040681 | – | – | – | ||
| CBS 370.92 T | Marine sediments, Spain | AB213434 | – | – | |||
| CBS 203.78 T | Dung of herbivore, India | AB213426 | GQ272638 | ||||
| UTHSC 06-1053 T | Urine, USA | ||||||
| FMR 4032 | Marine sediments, Spain | ||||||
| UTHSC 11-1163 T | Nails, USA | ||||||
| UTHSC 11-757 T | Bronchial wash, USA | ||||||
| CBS 693.77 T | Sputum, India | AB116544 | AB116536 | ||||
| UTHSC 01-2742 | Artificial pulmonary valve, USA | – | – | – | |||
| UTHSC 04-2580 | Blood, USA | – | |||||
| UTHSC 04-3423 | Toe nail, USA | – | |||||
| UTHSC 05-17 | Blood, USA | – | |||||
| UTHSC 06-982 | Pleural fluid, USA | – | – | – | |||
| UTHSC 06-3158 | Toe nail, USA | – | – | – | |||
| UTHSC 07-2450 | Eye, USA | – | |||||
| UTHSC 08-527 | Lung tissue, USA | – | – | – | |||
| UTHSC 08-786 | Lung biopsy, USA | – | |||||
| UTHSC 08-1699 | Bronchial wash, USA | – | – | – | |||
| UTHSC 08-1804 | Nails, USA | – | |||||
| UTHSC 08-2107 | Leg, USA | – | – | – | – | ||
| UTHSC 08-3547 | Sputum , USA | – | – | – | |||
| UTHSC 09-141 | Lung biopsy, USA | – | |||||
| UTHSC 09-2903 | Bronchial wash, USA | – | – | – | |||
| UTHSC 10-1652 | Cornea, USA | – | |||||
| UTHSC 10-1719 | Cornea, USA | – | – | – | |||
| UTHSC 10-2021 | Catheter tip, USA | – | |||||
| UTHSC 10-2583 | Urine, USA | – | |||||
| UTHSC 10-2729 | Nasal sinus, USA | – | |||||
| UTHSC 11-1256 | Bronchial wash, USA | – | |||||
| UTHSC 11-302 | Eye, USA | – | – | – | – | ||
| CBS 689.83 T | Gymnosperm wood chips and bark, Canada | – | – | – | |||
| UTHSC 05-3220 T | Foot, USA | ||||||
| CBS 653.89 T | Gallery of | – | – | – | |||
| CBS 628.83 T | Wall, The Netherlands | – | – | – | |||
| CBS 351.92 T | Bottom of water deposit, Spain | HE965759 | – | – | – | ||
| UTHSC 09-3174 | Bronchial wash, USA | HE965757 | – | – | – | ||
| UAMH 4290 | Grass, England | – | – | – | |||
| CBS 584.82 T | Leaf litter, Perú | – | – | – | |||
| NBRC 100564 | Decaying fir needles, Japan | – | – | – | – | ||
| – | – | JN865198 | – | – | – | ||
| UAMH 10912 | Ex gametophytes of | EU999180 | – | – | – | ||
| CBS 187.61 T | Soil, Australia | AB040683 | – | – | – | ||
| CBS 975.69 | Unknown, USA | FJ358283 | – | – | – | ||
| CBS 781.70 T | Dung of pack rat, USA | – | – | ||||
| CBS 516.65 | Unpainted board, USA | JF922029 | – | – | – | ||
| CBS 126.78 | Dung of cow, India | GU180654 | – | – | – | ||
| CBS 301.78 | Dung of goat, India | GU180653 | – | – | – | ||
| UAMH 10473 | Ex biofilm on soil, United Kingdom | GU951697 | – | – | – | ||
| CBS 655.71 T | Clay soil, USA | AB040684 | – | – | – | ||
| CBS 548.72 T | Dung of Guinea pig, India | AB040687 | – | – | |||
| UAMH 3593 | AB359428 | – | – | ||||
| CBS 410.72 T | Soil, USA | JF922021 | – | – | – | ||
| HKUCC 10235 | – | AY849942 | – | – | – | ||
| CBS 261.82 | EU040232 | – | – | – | |||
| CBS 109.43 | Unknown, Switzerland | FJ161171 | – | – | – | ||
| CBS 242.34 | Unknown, Canada | FJ161189 | – | – | – | ||
| NBRC 6894 | – | – | – | – | |||
| CBS 576.73 T | Agricultural soil, The Netherlands | FJ358286 | – | – | – | ||
| CBS 127.77 T | Culture contaminant, USA | AB040704 | – | – | – | ||
| CBS 960.72 | Unknown, France | JF922020 | – | – | – | ||
| CBS 392.61 T | Rhizosphere of | AB075320 | – | – | – | ||
| CBS 113675 | Soil, Brazil | JF922026 | – | – | – | ||
| FRR 2447 T | Soil, India | JF922025 | – | – | – | ||
| JCM 9546 | Decaying bone, Japan | AB075355 | – | – | – | ||
| CBS 947.70 | Cow hoof, Germany | AB075356 | – | – | – | ||
| CBS 198.34 | On | FJ161176 | – | – | – | ||
| UAMH 7299 | Ex porcupine dung, Canada | AY176718 | – | – | – | ||
| ICMP 15117 | Wood, New Zealand | EF063573 | – | – | – | ||
| CBS 591.71 | Soil, USA | AB075344 | – | – | – | ||
| – | Unknown, Sweden | AY853388 | – | – | – | ||
| CBS 955.73 T | Desert soil, Egypt | – | – | – | |||
| NBRC 9671 | Dung of rabbit, England | – | – | – | – | ||
| NBRC 9672 | On | – | – | – | – | ||
| – | – | AY789409 | – | – | – | ||
| – | – | AY640965 | – | – | – | ||
| NBRC 30255 | On | – | – | – | – | ||
| UAMH 7144 | Ex lingula specimen, USA | AB213427 | – | – | – | ||
| UAMH 8435 | Bronchial washing, USA | AB213428 | – | – | – | ||
| CBS 304.56 | Dung of rabbit, USA | FJ358288 | – | – | – | ||
| NBRC 7169 | – | – | – | – | – | ||
| – | – | AB075329 | – | – | – | ||
1 ATCC: American Type Culture Collection, Manassas, VA, USA; BCC: Biotec Culture Collection, National Center for Genetic Engineering and Biotechnology (BIOTEC), Bangkok, Thailand; CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands; FFR: culture collection of CSIRO, Australia; FMR: Faculty of Medicine Reus, Spain; HKUCC, Hong Kong University Culture Collection, Department of Ecology and Biodiversity, Hong Kong, China; ICMP: International Collection of Microorganisms, Landcare Research, Auckland, New Zealand; JCM: Japanese collection of microorganism; NBRC: NITE Biological Resource Center, Japan; UAMH: University of Alberta Microfungus Collection and Herbarium; Edmonton, Canada; UTHSC: Fungus Testing Laboratory, University of Texas Health Science Center, San Antonio, TX, USA; T = Ex-type strain.
2 Accession numbers of sequences newly determined in this study are indicated in bold. ITS: internal transcribed spacer regions of the nrDNA and intervening 5.8S nrDNA; ACT1: partial actin gene; CHS1: chitin synthase gene.
Fig. 1Maximum-likelihood (ML) tree constructed with sequences of the D1/D2 domains of the 28S rRNA gene. Bootstrap support values above 70 % are indicated at the nodes. The phylogenetic tree was rooted to Peziza varia and Peziza phyllogena. T = Ex-type strain.
Fig. 2Maximum-likelihood (ML) tree obtained from the combined DNA sequence data from three loci (ITS, ACT1, CHS1). Bootstrap support values above 70 % are indicated at the nodes. T = Ex-type strain.
Fig. 3Arthrographis kalrae. a–c. Colonies on PDA after 21 d at 25 °C; d–f. colonies on MEA 2 % at 25 °C after 21 d; g. branched conidiophores; h. lateral sessile conidia; i, j. pigmented chlamydospores and hyaline arthroconidia; k, l. whorls of short arthroconidial chains; m. sterile ascoma (a, d. CBS 693.77; b, e. UTHSC 09-141; c, f–h, k–m. UTHSC 05-17; i, j. UTHSC 11-1256). — Scale bars = 10 μm.
Fig. 5Arthrographis curvata. a, b. Colonies on MEA 2 % and PDA, respectively, after 21 d at 25 °C. — c–g. Asexual morph: c. simple or poorly branched conidiophores; d. arthroconidia and ascospores; e. lateral sessile conidia. f, g. curved conidia produced in BHI at 37 °C. — h–j. Sexual morph: h. ascoma; i. dark brown hyphae on the peridium; j. ascospores (a–c, e, g. FMR 4032; d, f, h–j. UTHSC 11-1163). — Scale bars = 10 μm.
Fig. 7Arthrographis longispora UTHSC 05-3220. a, b. Colonies on PDA and MEA 2 %, respectively, after 21 d at 25 °C; c, d. poorly differentiated conidiophores; e, f. cylindrical arthroconidia with truncate or rounded ends. — Scale bars = 10 μm.
Fig. 4Arthrographis chlamydospora UTHSC 06-1053. a, b. Colonies on PDA and MEA 2 %, respectively, after 21 d at 25 °C; c, d. branched conidiophores; e, f. conidiogenous hyphae fragmenting schizolytically; g. cylindrical and doliiform arthroconidia; h. chlamydospores. — Scale bars = 10 μm.
Fig. 6Arthrographis globosa UTHSC 11-757. a, b. Colonies on PDA and MEA 2 %, respectively, after 21 d at 25 °C; c. poorly differentiated conidiophores; d. conidiogenous hyphae fragmenting schizolytically producing ellipsoidal, doliiform, slightly fusiform and globose arthroconidia; e. globose arthroconidia. — Scale bars = 10 μm.