Literature DB >> 25229448

Biosynthesis: bioinformatics bolster a renaissance.

Ségolène Caboche1.   

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Year:  2014        PMID： 25229448     DOI： 10.1038/nchembio.1634

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


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  9 in total

Review 1.  Bioactive microbial metabolites.

Authors:  János Bérdy
Journal:  J Antibiot (Tokyo)       Date:  2005-01       Impact factor: 2.649

2.  Metagenomic approaches for exploiting uncultivated bacteria as a resource for novel biosynthetic enzymology.

Authors:  Micheal C Wilson; Jörn Piel
Journal:  Chem Biol       Date:  2013-05-23

3.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

Review 4.  New natural product biosynthetic chemistry discovered by genome mining.

Authors:  Christophe Corre; Gregory L Challis
Journal:  Nat Prod Rep       Date:  2009-05-22       Impact factor: 13.423

Review 5.  A genomic approach to the cryptic secondary metabolome of the anaerobic world.

Authors:  Anne-Catrin Letzel; Sacha J Pidot; Christian Hertweck
Journal:  Nat Prod Rep       Date:  2012-12-21       Impact factor: 13.423

6.  Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora.

Authors:  Nadine Ziemert; Anna Lechner; Matthias Wietz; Natalie Millán-Aguiñaga; Krystle L Chavarria; Paul Robert Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

Review 7.  In silico tools for the analysis of antibiotic biosynthetic pathways.

Authors:  Tilmann Weber
Journal:  Int J Med Microbiol       Date:  2014-02-19       Impact factor: 3.473

8.  Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

Authors:  Peter Cimermancic; Marnix H Medema; Jan Claesen; Kenji Kurita; Laura C Wieland Brown; Konstantinos Mavrommatis; Amrita Pati; Paul A Godfrey; Michael Koehrsen; Jon Clardy; Bruce W Birren; Eriko Takano; Andrej Sali; Roger G Linington; Michael A Fischbach
Journal:  Cell       Date:  2014-07-17       Impact factor: 41.582

9.  MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

Authors:  Myco Umemura; Hideaki Koike; Nozomi Nagano; Tomoko Ishii; Jin Kawano; Noriko Yamane; Ikuko Kozone; Katsuhisa Horimoto; Kazuo Shin-ya; Kiyoshi Asai; Jiujiang Yu; Joan W Bennett; Masayuki Machida
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240
  9 in total
  2 in total

1.  IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.

Authors:  Michalis Hadjithomas; I-Min Amy Chen; Ken Chu; Anna Ratner; Krishna Palaniappan; Ernest Szeto; Jinghua Huang; T B K Reddy; Peter Cimermančič; Michael A Fischbach; Natalia N Ivanova; Victor M Markowitz; Nikos C Kyrpides; Amrita Pati
Journal:  mBio       Date:  2015-07-14       Impact factor: 7.867

2.  IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

Authors:  Michalis Hadjithomas; I-Min A Chen; Ken Chu; Jinghua Huang; Anna Ratner; Krishna Palaniappan; Evan Andersen; Victor Markowitz; Nikos C Kyrpides; Natalia N Ivanova
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971
  2 in total

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