Literature DB >> 25219808

The genetic signatures of pediatric high-grade glioma: no longer a one-act play.

Alexander K Diaz1, Suzanne J Baker2.   

Abstract

Advances in understanding pediatric high-grade glioma (pHGG) genetics have revealed key differences between pHGG and adult HGG and have uncovered unique molecular drivers among subgroups within pHGG. The 3 core adult HGG pathways, the receptor tyrosine kinase-Ras-phosphatidylinositide 3-kinase, p53, and retinoblastoma networks, are also disrupted in pHGG, but they exhibit a different spectrum of effectors targeted by mutation. There are also similarities and differences in the genomic landscape of diffuse intrinsic pontine glioma (DIPG) and pediatric nonbrainstem (pNBS)-HGG. In 2012, histone H3 mutations were identified in nearly 80% of DIPGs and ~35% of pNBS-HGG. These were the first reports of histone mutations in human cancer, implicating novel biology in pediatric gliomagenesis. Additionally, DIPG and midline pNBS-HGG vary in the frequency and specific histone H3 amino acid substitution compared with pNBS-HGGs arising in the cerebral hemispheres, demonstrating a molecular difference among pHGG subgroups. The gene expression signatures as well as DNA methylation signatures of these tumors are also distinctive, reflecting a combination of the driving mutations and the developmental context from which they arise. These data collectively highlight unique selective pressures within the developing brainstem and solidify DIPG as a specific molecular and biological entity among pHGGs. Emerging studies continue to identify novel mutations that distinguish subgroups of pHGG. The molecular heterogeneity among pHGGs will undoubtedly have clinical implications moving forward. The discovery of unique oncogenic drivers is a critical first step in providing patients with appropriate, targeted therapies. Despite these insights, our vantage point has been largely limited to an in-depth analysis of protein coding sequences. Given the clear importance of histone mutations in pHGG, it will be interesting to see how aberrant epigenetic regulation contributes to tumorigenesis in the pediatric context. New mechanistic insights may allow for the identification of distinct vulnerabilities in this devastating spectrum of childhood tumors.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25219808      PMCID: PMC4170681          DOI: 10.1016/j.semradonc.2014.06.003

Source DB:  PubMed          Journal:  Semin Radiat Oncol        ISSN: 1053-4296            Impact factor:   5.934


  76 in total

1.  Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas.

Authors:  Sebastian Bender; Yujie Tang; Anders M Lindroth; Volker Hovestadt; David T W Jones; Marcel Kool; Marc Zapatka; Paul A Northcott; Dominik Sturm; Wei Wang; Bernhard Radlwimmer; Jonas W Højfeldt; Nathalène Truffaux; David Castel; Simone Schubert; Marina Ryzhova; Huriye Seker-Cin; Jan Gronych; Pascal David Johann; Sebastian Stark; Jochen Meyer; Till Milde; Martin Schuhmann; Martin Ebinger; Camelia-Maria Monoranu; Anitha Ponnuswami; Spenser Chen; Chris Jones; Olaf Witt; V Peter Collins; Andreas von Deimling; Nada Jabado; Stephanie Puget; Jacques Grill; Kristian Helin; Andrey Korshunov; Peter Lichter; Michelle Monje; Christoph Plass; Yoon-Jae Cho; Stefan M Pfister
Journal:  Cancer Cell       Date:  2013-10-31       Impact factor: 31.743

2.  The somatic genomic landscape of glioblastoma.

Authors:  Cameron W Brennan; Roel G W Verhaak; Aaron McKenna; Benito Campos; Houtan Noushmehr; Sofie R Salama; Siyuan Zheng; Debyani Chakravarty; J Zachary Sanborn; Samuel H Berman; Rameen Beroukhim; Brady Bernard; Chang-Jiun Wu; Giannicola Genovese; Ilya Shmulevich; Jill Barnholtz-Sloan; Lihua Zou; Rahulsimham Vegesna; Sachet A Shukla; Giovanni Ciriello; W K Yung; Wei Zhang; Carrie Sougnez; Tom Mikkelsen; Kenneth Aldape; Darell D Bigner; Erwin G Van Meir; Michael Prados; Andrew Sloan; Keith L Black; Jennifer Eschbacher; Gaetano Finocchiaro; William Friedman; David W Andrews; Abhijit Guha; Mary Iacocca; Brian P O'Neill; Greg Foltz; Jerome Myers; Daniel J Weisenberger; Robert Penny; Raju Kucherlapati; Charles M Perou; D Neil Hayes; Richard Gibbs; Marco Marra; Gordon B Mills; Eric Lander; Paul Spellman; Richard Wilson; Chris Sander; John Weinstein; Matthew Meyerson; Stacey Gabriel; Peter W Laird; David Haussler; Gad Getz; Lynda Chin
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 3.  Histone H3.3 mutations: a variant path to cancer.

Authors:  Benjamin T K Yuen; Paul S Knoepfler
Journal:  Cancer Cell       Date:  2013-11-11       Impact factor: 31.743

4.  Recurrent somatic mutations in ACVR1 in pediatric midline high-grade astrocytoma.

Authors:  Adam M Fontebasso; Simon Papillon-Cavanagh; Jeremy Schwartzentruber; Hamid Nikbakht; Noha Gerges; Pierre-Olivier Fiset; Denise Bechet; Damien Faury; Nicolas De Jay; Lori A Ramkissoon; Aoife Corcoran; David T W Jones; Dominik Sturm; Pascal Johann; Tadanori Tomita; Stewart Goldman; Mahmoud Nagib; Anne Bendel; Liliana Goumnerova; Daniel C Bowers; Jeffrey R Leonard; Joshua B Rubin; Tord Alden; Samuel Browd; J Russell Geyer; Sarah Leary; George Jallo; Kenneth Cohen; Nalin Gupta; Michael D Prados; Anne-Sophie Carret; Benjamin Ellezam; Louis Crevier; Almos Klekner; Laszlo Bognar; Peter Hauser; Miklos Garami; John Myseros; Zhifeng Dong; Peter M Siegel; Hayley Malkin; Azra H Ligon; Steffen Albrecht; Stefan M Pfister; Keith L Ligon; Jacek Majewski; Nada Jabado; Mark W Kieran
Journal:  Nat Genet       Date:  2014-04-06       Impact factor: 38.330

5.  Novel oncogenic PDGFRA mutations in pediatric high-grade gliomas.

Authors:  Barbara S Paugh; Xiaoyan Zhu; Chunxu Qu; Raelene Endersby; Alexander K Diaz; Junyuan Zhang; Dorine A Bax; Diana Carvalho; Rui M Reis; Arzu Onar-Thomas; Alberto Broniscer; Cynthia Wetmore; Jinghui Zhang; Chris Jones; David W Ellison; Suzanne J Baker
Journal:  Cancer Res       Date:  2013-08-22       Impact factor: 12.701

Review 6.  Paediatric and adult glioblastoma: multiform (epi)genomic culprits emerge.

Authors:  Dominik Sturm; Sebastian Bender; David T W Jones; Peter Lichter; Jacques Grill; Oren Becher; Cynthia Hawkins; Jacek Majewski; Chris Jones; Joseph F Costello; Antonio Iavarone; Kenneth Aldape; Cameron W Brennan; Nada Jabado; Stefan M Pfister
Journal:  Nat Rev Cancer       Date:  2014-02       Impact factor: 60.716

7.  The integrated landscape of driver genomic alterations in glioblastoma.

Authors:  Veronique Frattini; Vladimir Trifonov; Joseph Minhow Chan; Angelica Castano; Marie Lia; Francesco Abate; Stephen T Keir; Alan X Ji; Pietro Zoppoli; Francesco Niola; Carla Danussi; Igor Dolgalev; Paola Porrati; Serena Pellegatta; Adriana Heguy; Gaurav Gupta; David J Pisapia; Peter Canoll; Jeffrey N Bruce; Roger E McLendon; Hai Yan; Ken Aldape; Gaetano Finocchiaro; Tom Mikkelsen; Gilbert G Privé; Darell D Bigner; Anna Lasorella; Raul Rabadan; Antonio Iavarone
Journal:  Nat Genet       Date:  2013-08-05       Impact factor: 38.330

8.  PD-0332991, a CDK4/6 inhibitor, significantly prolongs survival in a genetically engineered mouse model of brainstem glioma.

Authors:  Kelly L Barton; Katherine Misuraca; Francisco Cordero; Elena Dobrikova; Hooney D Min; Matthias Gromeier; David G Kirsch; Oren J Becher
Journal:  PLoS One       Date:  2013-10-02       Impact factor: 3.240

9.  The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma.

Authors:  Gang Wu; Alexander K Diaz; Barbara S Paugh; Sherri L Rankin; Bensheng Ju; Yongjin Li; Xiaoyan Zhu; Chunxu Qu; Xiang Chen; Junyuan Zhang; John Easton; Michael Edmonson; Xiaotu Ma; Charles Lu; Panduka Nagahawatte; Erin Hedlund; Michael Rusch; Stanley Pounds; Tong Lin; Arzu Onar-Thomas; Robert Huether; Richard Kriwacki; Matthew Parker; Pankaj Gupta; Jared Becksfort; Lei Wei; Heather L Mulder; Kristy Boggs; Bhavin Vadodaria; Donald Yergeau; Jake C Russell; Kerri Ochoa; Robert S Fulton; Lucinda L Fulton; Chris Jones; Frederick A Boop; Alberto Broniscer; Cynthia Wetmore; Amar Gajjar; Li Ding; Elaine R Mardis; Richard K Wilson; Michael R Taylor; James R Downing; David W Ellison; Jinghui Zhang; Suzanne J Baker
Journal:  Nat Genet       Date:  2014-04-06       Impact factor: 38.330

10.  Recurrent activating ACVR1 mutations in diffuse intrinsic pontine glioma.

Authors:  Kathryn R Taylor; Alan Mackay; Nathalène Truffaux; Yaron Butterfield; Olena Morozova; Cathy Philippe; David Castel; Catherine S Grasso; Maria Vinci; Diana Carvalho; Angel M Carcaboso; Carmen de Torres; Ofelia Cruz; Jaume Mora; Natacha Entz-Werle; Wendy J Ingram; Michelle Monje; Darren Hargrave; Alex N Bullock; Stéphanie Puget; Stephen Yip; Chris Jones; Jacques Grill
Journal:  Nat Genet       Date:  2014-04-06       Impact factor: 38.330

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  25 in total

Review 1.  Genomics of adult and pediatric solid tumors.

Authors:  Zahraa Rahal; Farah Abdulhai; Humam Kadara; Raya Saab
Journal:  Am J Cancer Res       Date:  2018-08-01       Impact factor: 6.166

2.  An overview of neuro-oncology research and practice in Iran, three years with the NOSC initiative.

Authors:  Peiman Haddad; Sohrab Shazadi; Farhad Samiei; Homayoun Hadizadeh Kharrazi; Morteza Tabatabaeefar; Afshin Rakhsha; Mohammad Faranoosh; Mohammad Torabi-Nami; Ali Dadras; Atieh Liaghi; Leila Nafarieh
Journal:  Int J Clin Exp Med       Date:  2015-03-15

3.  H3K27M, IDH1, and ATRX expression in pediatric GBM and their clinical and prognostic significance.

Authors:  Alok Mohan Uppar; Harsha Sugur; A R Prabhuraj; M Bhaskara Rao; B Indira Devi; S Sampath; A Arivazhagan; Vani Santosh
Journal:  Childs Nerv Syst       Date:  2019-05-31       Impact factor: 1.475

Review 4.  Paediatric gliomas: diagnosis, molecular biology and management.

Authors:  Alexandros Blionas; Dimitrios Giakoumettis; Alexia Klonou; Eleftherios Neromyliotis; Ploutarchos Karydakis; Marios S Themistocleous
Journal:  Ann Transl Med       Date:  2018-06

5.  Primary Glial and Neuronal Tumors of the Ovary or Peritoneum: A Clinicopathologic Study of 11 Cases.

Authors:  Li Liang; Adriana Olar; Na Niu; Yi Jiang; Wenjun Cheng; Xiu-Wu Bian; Wentao Yang; Jing Zhang; Anna Yemelyanova; Anais Malpica; Zhihong Zhang; Gregory N Fuller; Jinsong Liu
Journal:  Am J Surg Pathol       Date:  2016-06       Impact factor: 6.394

Review 6.  Invited Review: Emerging functions of histone H3 mutations in paediatric diffuse high-grade gliomas.

Authors:  L H Kasper; S J Baker
Journal:  Neuropathol Appl Neurobiol       Date:  2020-01-07       Impact factor: 8.090

7.  Quantifying radiation therapy response using apparent diffusion coefficient (ADC) parametric mapping of pediatric diffuse intrinsic pontine glioma: a report from the pediatric brain tumor consortium.

Authors:  Rafael Ceschin; Mehmet Kocak; Sridhar Vajapeyam; Ian F Pollack; Arzu Onar-Thomas; Ira J Dunkel; Tina Young Poussaint; Ashok Panigrahy
Journal:  J Neurooncol       Date:  2019-02-27       Impact factor: 4.130

8.  NKG2D ligand expression in pediatric brain tumors.

Authors:  Kristen Haberthur; Kathryn Brennan; Virginia Hoglund; Stephanie Balcaitis; Harrison Chinn; Amira Davis; Shannon Kreuser; Conrad Winter; Sarah E S Leary; Gail H Deutsch; Richard G Ellenbogen; Courtney A Crane
Journal:  Cancer Biol Ther       Date:  2016-11-11       Impact factor: 4.742

Review 9.  Improving Diagnostic and Therapeutic Outcomes in Pediatric Brain Tumors.

Authors:  Sydney T Grob; Jean M Mulcahy Levy
Journal:  Mol Diagn Ther       Date:  2018-02       Impact factor: 4.074

Review 10.  Common mutations in ALK2/ACVR1, a multi-faceted receptor, have roles in distinct pediatric musculoskeletal and neural orphan disorders.

Authors:  Maurizio Pacifici; Eileen M Shore
Journal:  Cytokine Growth Factor Rev       Date:  2015-12-28       Impact factor: 7.638

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