Literature DB >> 25219332

Interpolation of diffusion weighted imaging datasets.

Tim B Dyrby1, Henrik Lundell2, Mark W Burke3, Nina L Reislev2, Olaf B Paulson4, Maurice Ptito5, Hartwig R Siebner2.   

Abstract

Diffusion weighted imaging (DWI) is used to study white-matter fibre organisation, orientation and structural connectivity by means of fibre reconstruction algorithms and tractography. For clinical settings, limited scan time compromises the possibilities to achieve high image resolution for finer anatomical details and signal-to-noise-ratio for reliable fibre reconstruction. We assessed the potential benefits of interpolating DWI datasets to a higher image resolution before fibre reconstruction using a diffusion tensor model. Simulations of straight and curved crossing tracts smaller than or equal to the voxel size showed that conventional higher-order interpolation methods improved the geometrical representation of white-matter tracts with reduced partial-volume-effect (PVE), except at tract boundaries. Simulations and interpolation of ex-vivo monkey brain DWI datasets revealed that conventional interpolation methods fail to disentangle fine anatomical details if PVE is too pronounced in the original data. As for validation we used ex-vivo DWI datasets acquired at various image resolutions as well as Nissl-stained sections. Increasing the image resolution by a factor of eight yielded finer geometrical resolution and more anatomical details in complex regions such as tract boundaries and cortical layers, which are normally only visualized at higher image resolutions. Similar results were found with typical clinical human DWI dataset. However, a possible bias in quantitative values imposed by the interpolation method used should be considered. The results indicate that conventional interpolation methods can be successfully applied to DWI datasets for mining anatomical details that are normally seen only at higher resolutions, which will aid in tractography and microstructural mapping of tissue compartments.
Copyright © 2014. Published by Elsevier Inc.

Entities:  

Keywords:  Cortical layers; DTI; Diffusion MRI; Hippocampus; Histology; Image resolution; Regularisation; Tractography; Validation

Mesh:

Year:  2014        PMID: 25219332     DOI: 10.1016/j.neuroimage.2014.09.005

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  37 in total

1.  Uncovering a Role for the Dorsal Hippocampal Commissure in Recognition Memory.

Authors:  M Postans; G D Parker; H Lundell; M Ptito; K Hamandi; W P Gray; J P Aggleton; T B Dyrby; D K Jones; M Winter
Journal:  Cereb Cortex       Date:  2020-03-14       Impact factor: 5.357

2.  Mapping fine-scale anatomy of gray matter, white matter, and trigeminal-root region applying spherical deconvolution to high-resolution 7-T diffusion MRI.

Authors:  Ralf Lützkendorf; Robin M Heidemann; Thorsten Feiweier; Michael Luchtmann; Sebastian Baecke; Jörn Kaufmann; Jörg Stadler; Eike Budinger; Johannes Bernarding
Journal:  MAGMA       Date:  2018-09-17       Impact factor: 2.310

3.  Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI.

Authors:  Joël Lefebvre; Alexandre Castonguay; Philippe Pouliot; Maxime Descoteaux; Frédéric Lesage
Journal:  Neurophotonics       Date:  2017-07-11       Impact factor: 3.593

4.  A Compressed-Sensing Approach for Super-Resolution Reconstruction of Diffusion MRI.

Authors:  Lipeng Ning; Kawin Setsompop; Oleg Michailovich; Nikos Makris; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Inf Process Med Imaging       Date:  2015

5.  Trade-off between angular and spatial resolutions in in vivo fiber tractography.

Authors:  Sjoerd B Vos; Murat Aksoy; Zhaoying Han; Samantha J Holdsworth; Julian Maclaren; Max A Viergever; Alexander Leemans; Roland Bammer
Journal:  Neuroimage       Date:  2016-01-14       Impact factor: 6.556

6.  Super-resolution musculoskeletal MRI using deep learning.

Authors:  Akshay S Chaudhari; Zhongnan Fang; Feliks Kogan; Jeff Wood; Kathryn J Stevens; Eric K Gibbons; Jin Hyung Lee; Garry E Gold; Brian A Hargreaves
Journal:  Magn Reson Med       Date:  2018-03-26       Impact factor: 4.668

7.  A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.

Authors:  Lipeng Ning; Kawin Setsompop; Oleg Michailovich; Nikos Makris; Martha E Shenton; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2015-10-23       Impact factor: 6.556

8.  A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii).

Authors:  Stuart D Washington; Julie Hamaide; Ben Jeurissen; Gwendolyn van Steenkiste; Toon Huysmans; Jan Sijbers; Steven Deleye; Jagmeet S Kanwal; Geert De Groof; Sayuan Liang; Johan Van Audekerke; Jeffrey J Wenstrup; Annemie Van der Linden; Susanne Radtke-Schuller; Marleen Verhoye
Journal:  Neuroimage       Date:  2018-08-10       Impact factor: 6.556

9.  Anatomy of nerve fiber bundles at micrometer-resolution in the vervet monkey visual system.

Authors:  Hiromasa Takemura; Nicola Palomero-Gallagher; Karl Zilles; Markus Axer; David Gräßel; Matthew J Jorgensen; Roger Woods
Journal:  Elife       Date:  2020-08-26       Impact factor: 8.140

10.  Multimodal characterization of the human nucleus accumbens.

Authors:  Samuel Cd Cartmell; Qiyuan Tian; Brandon J Thio; Christoph Leuze; Li Ye; Nolan R Williams; Grant Yang; Gabriel Ben-Dor; Karl Deisseroth; Warren M Grill; Jennifer A McNab; Casey H Halpern
Journal:  Neuroimage       Date:  2019-05-08       Impact factor: 6.556

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