Literature DB >> 25218325

Detection of post-translational modifications in single peptides using electron tunnelling currents.

Takahito Ohshiro1, Makusu Tsutsui1, Kazumichi Yokota1, Masayuki Furuhashi1, Masateru Taniguchi1, Tomoji Kawai1.   

Abstract

Post-translational modifications alter the properties of proteins through the cleavage of peptide bonds or the addition of a modifying group to one or more amino acids. These modifications allow proteins to perform their primary biological functions, but single-protein studies of post-translational modifications have been hindered by a lack of suitable analysis methods. Here, we show that single amino acids can be identified using electron tunnelling currents measured as the individual molecules pass through a nanoscale gap between electrodes. We identify 12 different amino acids and the post-translational modification phosphotyrosine, which is involved in the process that switches enzymes on and off. Furthermore, we show that the conductance measurements can be used to partially sequence peptides of an epidermal growth factor receptor substrate, and can discriminate a peptide from its phosphorylated variant.

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Year:  2014        PMID: 25218325     DOI: 10.1038/nnano.2014.193

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  28 in total

Review 1.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 2.  The ABC's (and XYZ's) of peptide sequencing.

Authors:  Hanno Steen; Matthias Mann
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

Review 3.  Protein kinase inhibitors: insights into drug design from structure.

Authors:  Martin E M Noble; Jane A Endicott; Louise N Johnson
Journal:  Science       Date:  2004-03-19       Impact factor: 47.728

4.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

5.  Identification of post-translational modifications by blind search of mass spectra.

Authors:  Dekel Tsur; Stephen Tanner; Ebrahim Zandi; Vineet Bafna; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2005-11-27       Impact factor: 54.908

Review 6.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

7.  Single-molecule junctions with strong molecule-electrode coupling.

Authors:  Masateru Taniguchi; Makusu Tsutsui; Kohei Shoji; Hideki Fujiwara; Tomoji Kawai
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

8.  Integrated proteomic analysis of post-translational modifications by serial enrichment.

Authors:  Philipp Mertins; Jana W Qiao; Jinal Patel; Namrata D Udeshi; Karl R Clauser; D R Mani; Michael W Burgess; Michael A Gillette; Jacob D Jaffe; Steven A Carr
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

Review 9.  Ubiquitylation in apoptosis: a post-translational modification at the edge of life and death.

Authors:  Domagoj Vucic; Vishva M Dixit; Ingrid E Wertz
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06-23       Impact factor: 94.444

10.  Single-molecule electrical random resequencing of DNA and RNA.

Authors:  Takahito Ohshiro; Kazuki Matsubara; Makusu Tsutsui; Masayuki Furuhashi; Masateru Taniguchi; Tomoji Kawai
Journal:  Sci Rep       Date:  2012-07-10       Impact factor: 4.379

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  34 in total

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Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

Review 2.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

4.  Reading the primary structure of a protein with 0.07 nm3 resolution using a subnanometre-diameter pore.

Authors:  Eamonn Kennedy; Zhuxin Dong; Clare Tennant; Gregory Timp
Journal:  Nat Nanotechnol       Date:  2016-07-25       Impact factor: 39.213

5.  Classification of DNA nucleotides with transverse tunneling currents.

Authors:  Jonas Nyvold Pedersen; Paul Boynton; Massimiliano Di Ventra; Antti-Pekka Jauho; Henrik Flyvbjerg
Journal:  Nanotechnology       Date:  2016-11-29       Impact factor: 3.874

6.  First principle approach to elucidate transport properties through L-glutamic acid-based molecular devices using symmetrical electrodes.

Authors:  Gaurav Sikri; Ravinder Singh Sawhney
Journal:  J Mol Model       Date:  2020-03-07       Impact factor: 1.810

7.  Single-molecule peptide fingerprinting.

Authors:  Jetty van Ginkel; Mike Filius; Malwina Szczepaniak; Pawel Tulinski; Anne S Meyer; Chirlmin Joo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

8.  Effects of Polymer Length and Salt Concentration on the Transport of ssDNA in Nanofluidic Channels.

Authors:  Weixin Qian; Kentaro Doi; Satoyuki Kawano
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

Review 9.  Conductivity-based detection techniques in nanofluidic devices.

Authors:  Zachary D Harms; Daniel G Haywood; Andrew R Kneller; Stephen C Jacobson
Journal:  Analyst       Date:  2015-05-19       Impact factor: 4.616

10.  Click Addition of a DNA Thread to the N-Termini of Peptides for Their Translocation through Solid-State Nanopores.

Authors:  Sudipta Biswas; Weisi Song; Chad Borges; Stuart Lindsay; Peiming Zhang
Journal:  ACS Nano       Date:  2015-09-16       Impact factor: 15.881

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