Literature DB >> 25210067

Comparison of a semiautomated commercial repetitive-sequence-based PCR method with spoligotyping, 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing, and restriction fragment length polymorphism-based analysis of IS6110 for Mycobacterium tuberculosis typing.

F Brossier1, C Sola2, G Millot3, V Jarlier4, N Veziris4, W Sougakoff4.   

Abstract

Fifty-two multidrug-resistant isolates of Mycobacterium tuberculosis representative of the currently predominant lineages in France were analyzed using repetitive-sequence-based PCR (rep-PCR) DiversiLab (DL), spoligotyping, 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing (MIRU-VNTR), and restriction fragment length polymorphism of IS6110 (IS6110-RFLP). DL, as opposed to MIRU-VNTR and IS6110-RFLP analysis, did not allow discrimination among half of the isolates, an indication of comparatively lower resolving power.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID： 25210067      PMCID： PMC4313259          DOI： 10.1128/JCM.02226-14

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  29 in total

1.  Molecular epidemiology of Mycobacterium tuberculosis in western Sweden.

Authors:  Karine Brudey; Max Gordon; Peter Moström; Liselott Svensson; Bodil Jonsson; Christophe Sola; Malin Ridell; Nalin Rastogi
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

2.  Microbial DNA typing by automated repetitive-sequence-based PCR.

Authors:  Mimi Healy; Joe Huong; Traci Bittner; Maricel Lising; Stacie Frye; Sabeen Raza; Robert Schrock; Janet Manry; Alex Renwick; Robert Nieto; Charles Woods; James Versalovic; James R Lupski
Journal:  J Clin Microbiol       Date:  2005-01       Impact factor: 5.948

3.  Comparison of repetitive-sequence-based polymerase chain reaction with random amplified polymorphic DNA analysis for rapid genotyping of nontuberculosis mycobacteria.

Authors:  Sara Christianson; Joyce Wolfe; Hafid Soualhine; Meenu K Sharma
Journal:  Can J Microbiol       Date:  2012-07-18       Impact factor: 2.419

4.  Use of rapid genomic deletion typing to monitor a tuberculosis outbreak within an urban homeless population.

Authors:  Robert Freeman; Midori Kato-Maeda; Kirsten A Hauge; Kathleen L Horan; Eyal Oren; Masahiro Narita; Carolyn K Wallis; Don Cave; Charles M Nolan; Peter M Small; Gerard A Cangelosi
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

5.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors:  J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

6.  Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis.

Authors:  Philip Supply; Caroline Allix; Sarah Lesjean; Mara Cardoso-Oelemann; Sabine Rüsch-Gerdes; Eve Willery; Evgueni Savine; Petra de Haas; Henk van Deutekom; Solvig Roring; Pablo Bifani; Natalia Kurepina; Barry Kreiswirth; Christophe Sola; Nalin Rastogi; Vincent Vatin; Maria Cristina Gutierrez; Maryse Fauville; Stefan Niemann; Robin Skuce; Kristin Kremer; Camille Locht; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2006-09-27       Impact factor: 5.948

7.  Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria.

Authors:  J D van Embden; T van Gorkom; K Kremer; R Jansen; B A van Der Zeijst; L M Schouls
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

8.  Three-year longitudinal study of genotypes of Mycobacterium tuberculosis isolates in Tuscany, Italy.

Authors:  Nicoletta Lari; Laura Rindi; Daniela Bonanni; Nalin Rastogi; Christophe Sola; Enrico Tortoli; Carlo Garzelli
Journal:  J Clin Microbiol       Date:  2007-04-25       Impact factor: 5.948

Review 9.  The role of IS6110 in the evolution of Mycobacterium tuberculosis.

Authors:  Christopher R E McEvoy; Alecia A Falmer; Nicolaas C Gey van Pittius; Thomas C Victor; Paul D van Helden; Robin M Warren
Journal:  Tuberculosis (Edinb)       Date:  2007-07-12       Impact factor: 3.131

10.  Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology.

Authors:  Karine Brudey; Jeffrey R Driscoll; Leen Rigouts; Wolfgang M Prodinger; Andrea Gori; Sahal A Al-Hajoj; Caroline Allix; Liselotte Aristimuño; Jyoti Arora; Viesturs Baumanis; Lothar Binder; Patricia Cafrune; Angel Cataldi; Soonfatt Cheong; Roland Diel; Christopher Ellermeier; Jason T Evans; Maryse Fauville-Dufaux; Séverine Ferdinand; Dario Garcia de Viedma; Carlo Garzelli; Lidia Gazzola; Harrison M Gomes; M Cristina Guttierez; Peter M Hawkey; Paul D van Helden; Gurujaj V Kadival; Barry N Kreiswirth; Kristin Kremer; Milan Kubin; Savita P Kulkarni; Benjamin Liens; Troels Lillebaek; Minh Ly Ho; Carlos Martin; Christian Martin; Igor Mokrousov; Olga Narvskaïa; Yun Fong Ngeow; Ludmilla Naumann; Stefan Niemann; Ida Parwati; Zeaur Rahim; Voahangy Rasolofo-Razanamparany; Tiana Rasolonavalona; M Lucia Rossetti; Sabine Rüsch-Gerdes; Anna Sajduda; Sofia Samper; Igor G Shemyakin; Urvashi B Singh; Akos Somoskovi; Robin A Skuce; Dick van Soolingen; Elisabeth M Streicher; Philip N Suffys; Enrico Tortoli; Tatjana Tracevska; Véronique Vincent; Tommie C Victor; Robin M Warren; Sook Fan Yap; Khadiza Zaman; Françoise Portaels; Nalin Rastogi; Christophe Sola
Journal:  BMC Microbiol       Date:  2006-03-06       Impact factor: 3.605
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  5 in total

1.  Implementation of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Loci in Mycobacterium tuberculosis Molecular Epidemiology.

Authors:  Alberto Trovato; Silva Tafaj; Simone Battaglia; Riccardo Alagna; Donika Bardhi; Perlat Kapisyzi; Silvana Bala; Migena Haldeda; Emanuele Borroni; Hasan Hafizi; Daniela Maria Cirillo
Journal:  J Clin Microbiol       Date:  2015-12-09       Impact factor: 5.948

2.  Characterization of a Clone of Mycobacterium tuberculosis Clinical Isolates with Mutations in KatG (A110V), EthA (Q269STOP), and the inhA Promoter (-15C→T).

Authors:  Florence Brossier; Christophe Sola; Christine Bernard; Vincent Jarlier; Nicolas Veziris; Wladimir Sougakoff
Journal:  J Clin Microbiol       Date:  2015-07-08       Impact factor: 5.948

Review 3.  Methodological and Clinical Aspects of the Molecular Epidemiology of Mycobacterium tuberculosis and Other Mycobacteria.

Authors:  Tomasz Jagielski; Alina Minias; Jakko van Ingen; Nalin Rastogi; Anna Brzostek; Anna Żaczek; Jarosław Dziadek
Journal:  Clin Microbiol Rev       Date:  2016-04       Impact factor: 26.132

4.  Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial.

Authors:  Adam A Witney; Anna L E Bateson; Amina Jindani; Patrick P J Phillips; David Coleman; Neil G Stoker; Philip D Butcher; Timothy D McHugh
Journal:  BMC Med       Date:  2017-03-29       Impact factor: 8.775

5.  Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil.

Authors:  Nayanne Gama Teixeira Dantas; Phillip Noel Suffys; Wânia da Silva Carvalho; Harrison Magdinier Gomes; Isabela Neves de Almeida; Lida Jouca de Assis; Claudio José Augusto; Michel Kireopori Gomgnimbou; Guislaine Refregier; Christophe Sola; Silvana Spíndola de Miranda
Journal:  BMC Infect Dis       Date:  2015-08-01       Impact factor: 3.090
  5 in total

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