Literature DB >> 26659207

Implementation of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Loci in Mycobacterium tuberculosis Molecular Epidemiology.

Alberto Trovato1, Silva Tafaj2, Simone Battaglia1, Riccardo Alagna1, Donika Bardhi2, Perlat Kapisyzi2, Silvana Bala2, Migena Haldeda2, Emanuele Borroni1, Hasan Hafizi2, Daniela Maria Cirillo3.   

Abstract

This study shows that the addition of a consensus 4-locus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem repeat (MIRU-VNTR) loci to the spoligotyping-24-locus MIRU-VNTR typing strategy is a well-standardized approach that can contribute to an improvement of the true cluster definition while retaining high typeability in non-Beijing strains.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID： 26659207      PMCID： PMC4733199          DOI： 10.1128/JCM.02945-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  15 in total

1.  Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

Authors:  Thomas Weniger; Justina Krawczyk; Philip Supply; Dag Harmsen; Stefan Niemann
Journal:  Infect Genet Evol       Date:  2012-02-10       Impact factor: 3.342

2.  DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing.

Authors:  Anita C Schürch; Dick van Soolingen
Journal:  Infect Genet Evol       Date:  2011-11-03       Impact factor: 3.342

3.  Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates.

Authors:  Caroline Allix-Béguec; Céline Wahl; Madeleine Hanekom; Vladyslav Nikolayevskyy; Francis Drobniewski; Shinji Maeda; Isolina Campos-Herrero; Igor Mokrousov; Stefan Niemann; Irina Kontsevaya; Nalin Rastogi; Sofia Samper; Li-Hwei Sng; Robin M Warren; Philip Supply
Journal:  J Clin Microbiol       Date:  2013-10-30       Impact factor: 5.948

Review 4.  Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing.

Authors:  T M Walker; P Monk; E Grace Smith; T E A Peto
Journal:  Clin Microbiol Infect       Date:  2013-02-21       Impact factor: 8.067

5.  Comparison of a semiautomated commercial repetitive-sequence-based PCR method with spoligotyping, 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing, and restriction fragment length polymorphism-based analysis of IS6110 for Mycobacterium tuberculosis typing.

Authors:  F Brossier; C Sola; G Millot; V Jarlier; N Veziris; W Sougakoff
Journal:  J Clin Microbiol       Date:  2014-09-10       Impact factor: 5.948

Review 6.  Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches.

Authors:  Stefan Niemann; Philip Supply
Journal:  Cold Spring Harb Perspect Med       Date:  2014-09-04       Impact factor: 6.915

7.  Unusual mycobacterial interspersed repetitive-unit alleles in loci 580 and 4348 among Mycobacterium tuberculosis isolates in Albania.

Authors:  Alberto Trovato; Emanuele Borroni; Silva Tafaj; Hasan Hafizi; Daniela Maria Cirillo
Journal:  J Clin Microbiol       Date:  2014-09-24       Impact factor: 5.948

8.  Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology.

Authors:  J Kamerbeek; L Schouls; A Kolk; M van Agterveld; D van Soolingen; S Kuijper; A Bunschoten; H Molhuizen; R Shaw; M Goyal; J van Embden
Journal:  J Clin Microbiol       Date:  1997-04       Impact factor: 5.948

9.  Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

Authors:  Andreas Roetzer; Roland Diel; Thomas A Kohl; Christian Rückert; Ulrich Nübel; Jochen Blom; Thierry Wirth; Sebastian Jaenicke; Sieglinde Schuback; Sabine Rüsch-Gerdes; Philip Supply; Jörn Kalinowski; Stefan Niemann
Journal:  PLoS Med       Date:  2013-02-12       Impact factor: 11.069

Review 10.  Current methods in the molecular typing of Mycobacterium tuberculosis and other mycobacteria.

Authors:  Tomasz Jagielski; Jakko van Ingen; Nalin Rastogi; Jarosław Dziadek; Paweł K Mazur; Jacek Bielecki
Journal:  Biomed Res Int       Date:  2014-01-05       Impact factor: 3.411
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  1 in total

1.  Prediction of Local Transmission of Mycobacterium tuberculosis Isolates of a Predominantly Beijing Lineage by Use of a Variable-Number Tandem-Repeat Typing Method Incorporating a Consensus Set of Hypervariable Loci.

Authors:  Yoshiro Murase; Kiyohiko Izumi; Akihiro Ohkado; Akio Aono; Kinuyo Chikamatsu; Hiroyuki Yamada; Yuriko Igarashi; Akiko Takaki; Satoshi Mitarai
Journal:  J Clin Microbiol       Date:  2017-12-26       Impact factor: 5.948
  1 in total

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