Literature DB >> 31502555

Long non-coding RNAs: Fine-tuning the developmental responses in plants.

Riddhi Datta1, Soumitra Paul.   

Abstract

Plant developmental biology is associated with various gene regulatory pathways involved in different phases of their life cycle. In course of development, growth and differentiation of different organs in plants are regulated by specific sets of gene expression. With the advances in genomic and bioinformatic techniques, particularly high-throughput sequencing technology, many transcriptional units with no protein-coding potential have been discovered. Previously thought to be the dark matters of genome, long non-coding RNAs (lncRNAs) are gradually gaining importance as crucial players in gene regulation during different developmental phases. Some lncRNAs, showing complementarity to microRNAs (miRNAs), are used as endogenous target mimics of specific miRNA family. A number of lncRNAs can also act as natural antisense transcripts to attenuate the expression of coding genes. Although lncRNA-mediated regulations have extensively been studied in animals, plant lncRNA research is still in its initial phase. The present review highlights the regulatory mechanism and different physiological aspects of lncRNAs in plant development. In plants, lncRNAs are found to be associated with a number of plant developmental functions such as lateral root development, vernalization, photomorphogenesis, pollen development, fiber development and nodulation. Understanding these potent roles of lncRNAs in plant development can further provide novel tools for crop improvement programs in future.

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Year:  2019        PMID: 31502555

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  72 in total

1.  Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction.

Authors:  Jonghyun Kim; Hankuil Yi; Goh Choi; Byongchul Shin; Pill-Soon Song; Giltsu Choi
Journal:  Plant Cell       Date:  2003-09-24       Impact factor: 11.277

2.  Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula.

Authors:  Anna Campalans; Adam Kondorosi; Martin Crespi
Journal:  Plant Cell       Date:  2004-03-22       Impact factor: 11.277

3.  BcMF11, a putative pollen-specific non-coding RNA from Brassica campestris ssp. chinensis.

Authors:  Jiang-Hua Song; Jia-Shu Cao; Xiao-Lin Yu; Xun Xiang
Journal:  J Plant Physiol       Date:  2007-01-04       Impact factor: 3.549

4.  Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

Authors:  Julia A Chekanova; Brian D Gregory; Sergei V Reverdatto; Huaming Chen; Ravi Kumar; Tanya Hooker; Junshi Yazaki; Pinghua Li; Nikolai Skiba; Qian Peng; Jose Alonso; Vladimir Brukhin; Ueli Grossniklaus; Joseph R Ecker; Dmitry A Belostotsky
Journal:  Cell       Date:  2007-12-28       Impact factor: 41.582

5.  What history tells us XIV. Regulation of gene expression by non-coding RNAs: the early steps.

Authors:  Michel Morange
Journal:  J Biosci       Date:  2008-09       Impact factor: 1.826

6.  In Silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula.

Authors:  Jiayu Wen; Brian J Parker; Georg F Weiller
Journal:  In Silico Biol       Date:  2007

Review 7.  Diamonds in the rough: mRNA-like non-coding RNAs.

Authors:  Linda A Rymarquis; James P Kastenmayer; Alexander G Hüttenhofer; Pamela J Green
Journal:  Trends Plant Sci       Date:  2008-04-28       Impact factor: 18.313

8.  Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex.

Authors:  C Sousa; C Johansson; C Charon; H Manyani; C Sautter; A Kondorosi; M Crespi
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

9.  Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize.

Authors:  Jinxia Ma; Bingxue Yan; Yanying Qu; Fangfang Qin; Yantao Yang; Xiujing Hao; Jingjuan Yu; Qian Zhao; Dengyun Zhu; Guangming Ao
Journal:  J Cell Biochem       Date:  2008-09-01       Impact factor: 4.429

10.  Target mimicry provides a new mechanism for regulation of microRNA activity.

Authors:  José Manuel Franco-Zorrilla; Adrián Valli; Marco Todesco; Isabel Mateos; María Isabel Puga; Ignacio Rubio-Somoza; Antonio Leyva; Detlef Weigel; Juan Antonio García; Javier Paz-Ares
Journal:  Nat Genet       Date:  2007-07-22       Impact factor: 38.330

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  6 in total

1.  Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis.

Authors:  Lanxia Li; Haofei Luo; Do-Hwan Lim; Lu Han; Yan Li; Xiang-Dong Fu; Yijun Qi
Journal:  Nat Plants       Date:  2021-10-14       Impact factor: 15.793

2.  Expression Profiles and Characteristics of Apple lncRNAs in Roots, Phloem, Leaves, Flowers, and Fruit.

Authors:  Dajiang Wang; Yuan Gao; Simiao Sun; Lianwen Li; Kun Wang
Journal:  Int J Mol Sci       Date:  2022-05-25       Impact factor: 6.208

3.  Genome-wide identification and integrated analysis of lncRNAs in rice backcross introgression lines (BC2F12).

Authors:  Mengdi Li; Aqin Cao; Ruihua Wang; Zeyu Li; Shaoqing Li; Jianbo Wang
Journal:  BMC Plant Biol       Date:  2020-06-29       Impact factor: 4.215

4.  Identification and characterization of long non-coding RNA (lncRNA) in the developing seeds of Jatropha curcas.

Authors:  Xihuan Yan; Lanqing Ma; MingFeng Yang
Journal:  Sci Rep       Date:  2020-06-25       Impact factor: 4.379

Review 5.  Long Non-Coding RNAs as Emerging Regulators of Pathogen Response in Plants.

Authors:  Yashraaj Sharma; Alok Sharma; Kashmir Singh; Santosh Kumar Upadhyay
Journal:  Noncoding RNA       Date:  2022-01-11

Review 6.  Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses.

Authors:  Li Chen; Qian-Hao Zhu; Kerstin Kaufmann
Journal:  Planta       Date:  2020-10-24       Impact factor: 4.116

  6 in total

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