| Literature DB >> 25203200 |
Zhong-hua Cui1, Hans Lischka, Habtamu Z Beneberu, Miklos Kertesz.
Abstract
The concept of a double-bonded pancake bonding mechanism is introduced to explain the extremely short π-π stacking contacts in dimers of dithiatriazines. While ordinary single pancake bonEntities:
Year: 2014 PMID: 25203200 PMCID: PMC4183611 DOI: 10.1021/ja505624y
Source DB: PubMed Journal: J Am Chem Soc ISSN: 0002-7863 Impact factor: 15.419
Chart 1Molecules Discussed: Phenalenyl Radical (1), Tetracyanoethylene Radical Anion (2), 1,2,4,6-Thiatriazine Radical (3), and 1,3,2,4,6-Dithiatriazine (4)a
Chart 2(a) Molecular Orbital Diagram for Single Pancake-Bonded Dimers; (b) Molecular Orbital Diagram for Double Pancake-Bonded Dimers Based on a Triplet Ground State of the Monomer; (c) Molecular Orbital Diagram for Double Pancake-Bonded Dimer Based on a Singlet Diradicaloid Ground State of the Monomer with a Low HOMO–LUMO Gapa
Figure 1Illustration of the bonding and antibonding combinations of the two and four SOMOs for 3 (a) and 4 (b), respectively. D is the short intermolecular sulfur–sulfur contact, DS–S.
Figure 2Structures of two substituted dithiatriazine (HCN3S2)2 π dimers indicate close similarity in their structures. These dimers were excised from their respective crystal structures: the phenyl derivative[15] (5) and the 4-chlorophenyl derivative[16] (6) are derivatives of 1,3,2,4,6-dithiatriazine, 4.
Chart 3MO Diagrams for the Dimers of Various States of 1, 2, 3, and 4a
Figure 3Potential energy scans for (a) the singlet and triplet states of 3 and (b) the singlet, triplet, and quintet states of 4. The SOMO–SOMO interaction energies are represented in (c) and are defined in the inset according to eq 6. Computations refer to C2 symmetry using an MR-AQCC/6-311++G(2d,2p) level of theory.
Computeda Interaction Energies, Eint, and Its Components, EvdW and ESOMO–SOMO
| species | ||||
|---|---|---|---|---|
| 3.104 | –11.5 | 5.7 | –17.2 | |
| 3.676 | –3.3 | –3.3 | 0.0 | |
| 3.104 | 5.7 | 5.7 | 0.0 | |
| 2.735 | –10.1 | 13.0 | –23.1 | |
| 3.820 | –2.7 | –2.7 | 0.0 | |
| 2.735 | 13.0 | 13.0 | 0.0 | |
| 2.870 | –7.0 | 11.8 | –18.8 | |
| 4.0 | –1.8 | –1.8 | 0.0 | |
| 2.870 | 11.8 | 11.8 | 0.0 | |
| 2.571 | –27.7 | 62.5 | –90.2 | |
| 3.6 | –2.9 | –0.4 | –2.5 | |
| 2.571 | 62.5 | 62.5 | 0.0 | |
| 3.6 | –0.4 | –0.4 | 0.0 | |
| 4.1 | –1.8 | –1.8 | 0.0 |
MR-AQCC/6-311++G(2d,2p) level of theory. Data for 1 are from ref (19) and for 2 from ref (3).
S, T, and Q stand for singlet, triplet, and quintet states, respectively.
D represents C–C contacts for 1 and 2 and S–S contacts for the rest of the dimers.
Optimized geometry of the singlet (S) dimer.
Optimized geometry of the triplet (T) dimer.
Computed high-spin state using the singlet ground state geometry of the dimer.
Minimum on the rigid D scan for the triplet (T) dimer.
Minimum on the rigid D scan for the quintet (Q) dimer.
Figure 4(a) Total number of effectively unpaired electrons (NU) of 3 and 4 and (b) occupation numbers of the frontier NOs of the singlet states of 3 and 4 as a function of the separation distance (DS–S).
Figure 5Effectively unpaired electron density (isovalue 0.002 au) and atomic contributions for the singlets of 3 and 4. NU is the number of effectively unpaired electrons given in parentheses indicating stronger electron pairing in 4 compared to 3.
Figure 6Optimized geometry of the Se analogue of 4 with UB3LYP/6-311++G(2d,2p).
Figure 7Optimized geometry of the S+ substituted analogue of 4, (S3N3+)2. Two configurations are shown with UB3LYP/6-311++G(2d,2p).
Figure 8Potential energy scans of the singlet and quintet of the (S3N3)22+ π dimer with D3 symmetry (8) as a function of the S···S distance (DS–S) computed at the MR-AQCC(4,4)/6-311++G(2d,2p) level.
Figure 9Optimized geometry of the hypothetical double pancake bonded dimer, (C5F5+)2.