Literature DB >> 25185543

Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy.

Changyong Song1, Masatoshi Takagi2, Jaehyun Park3, Rui Xu4, Marcus Gallagher-Jones5, Naoko Imamoto2, Tetsuya Ishikawa3.   

Abstract

Despite the notable progress that has been made with nano-bio imaging probes, quantitative nanoscale imaging of multistructured specimens such as mammalian cells remains challenging due to their inherent structural complexity. Here, we successfully performed three-dimensional (3D) imaging of mammalian nuclei by combining coherent x-ray diffraction microscopy, explicitly visualizing nuclear substructures at several tens of nanometer resolution, and optical fluorescence microscopy, cross confirming the substructures with immunostaining. This demonstrates the successful application of coherent x-rays to obtain the 3D ultrastructure of mammalian nuclei and establishes a solid route to nanoscale imaging of complex specimens.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25185543      PMCID: PMC4156684          DOI: 10.1016/j.bpj.2014.07.028

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

Review 2.  The nucleolus.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

3.  Quantitative image reconstruction of GaN quantum dots from oversampled diffraction intensities alone.

Authors:  Jianwei Miao; Yoshinori Nishino; Yoshiki Kohmura; Bart Johnson; Changyong Song; Subhash H Risbud; Tetsuya Ishikawa
Journal:  Phys Rev Lett       Date:  2005-08-17       Impact factor: 9.161

Review 4.  Nucleolus: from structure to dynamics.

Authors:  Danièle Hernandez-Verdun
Journal:  Histochem Cell Biol       Date:  2005-11-22       Impact factor: 4.304

5.  Fresnel coherent diffractive imaging.

Authors:  G J Williams; H M Quiney; B B Dhal; C Q Tran; K A Nugent; A G Peele; D Paterson; M D de Jonge
Journal:  Phys Rev Lett       Date:  2006-07-14       Impact factor: 9.161

Review 6.  Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.

Authors:  Christian Lanctôt; Thierry Cheutin; Marion Cremer; Giacomo Cavalli; Thomas Cremer
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

7.  Development of an adaptable coherent x-ray diffraction microscope with the emphasis on imaging hydrated specimens.

Authors:  Daewoong Nam; Jaehyun Park; Marcus Gallagher-Jones; Hiroki Shimada; Sangsoo Kim; Sunam Kim; Yoshiki Kohmura; Tetsuya Ishikawa; Changyong Song
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

8.  Three-dimensional imaging of dislocations in a nanoparticle at atomic resolution.

Authors:  Chien-Chun Chen; Chun Zhu; Edward R White; Chin-Yi Chiu; M C Scott; B C Regan; Laurence D Marks; Yu Huang; Jianwei Miao
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

9.  Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging.

Authors:  Marcus Gallagher-Jones; Yoshitaka Bessho; Sunam Kim; Jaehyun Park; Sangsoo Kim; Daewoong Nam; Chan Kim; Yoonhee Kim; Do Young Noh; Osamu Miyashita; Florence Tama; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Kensuke Tono; Yoshiki Kohmura; Makina Yabashi; S Samar Hasnain; Tetsuya Ishikawa; Changyong Song
Journal:  Nat Commun       Date:  2014-05-02       Impact factor: 14.919

10.  Cajal bodies, nucleoli, and speckles in the Xenopus oocyte nucleus have a low-density, sponge-like structure.

Authors:  Korie E Handwerger; Jason A Cordero; Joseph G Gall
Journal:  Mol Biol Cell       Date:  2004-10-27       Impact factor: 4.138

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  7 in total

1.  Spectral comparisons of mammalian cells and intact organelles by solid-state NMR.

Authors:  Sabrina H Werby; Lynette Cegelski
Journal:  J Struct Biol       Date:  2018-05-30       Impact factor: 2.867

Review 2.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

3.  Stochastic chromatin packing of 3D mitotic chromosomes revealed by coherent X-rays.

Authors:  Daeho Sung; Chan Lim; Masatoshi Takagi; Chulho Jung; Heemin Lee; Do Hyung Cho; Jae-Yong Shin; Kangwoo Ahn; Junha Hwang; Daewoong Nam; Yoshiki Kohmura; Tetsuya Ishikawa; Do Young Noh; Naoko Imamoto; Jae-Hyung Jeon; Changyong Song
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

4.  Combined optical fluorescence microscopy and X-ray tomography reveals substructures in cell nuclei in 3D.

Authors:  Andrew Wittmeier; Marten Bernhardt; Anna-Lena Robisch; Chiara Cassini; Markus Osterhoff; Tim Salditt; Sarah Köster
Journal:  Biomed Opt Express       Date:  2022-08-25       Impact factor: 3.562

5.  Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge.

Authors:  Marcus Gallagher-Jones; Carlos Sato Baraldi Dias; Alan Pryor; Karim Bouchmella; Lingrong Zhao; Yuan Hung Lo; Mateus Borba Cardoso; David Shapiro; Jose Rodriguez; Jianwei Miao
Journal:  Sci Rep       Date:  2017-07-06       Impact factor: 4.379

6.  Visualization of a Mammalian Mitochondrion by Coherent X-ray Diffractive Imaging.

Authors:  Yoonhee Kim; Chan Kim; Ou Young Kwon; Daewoong Nam; Sang Soo Kim; Jae Hyun Park; Sunam Kim; Marcus Gallagher-Jones; Yoshiki Kohmura; Tetsuya Ishikawa; Changyong Song; Giyoong Tae; Do Young Noh
Journal:  Sci Rep       Date:  2017-05-12       Impact factor: 4.379

7.  Tomography of a Cryo-immobilized Yeast Cell Using Ptychographic Coherent X-Ray Diffractive Imaging.

Authors:  K Giewekemeyer; C Hackenberg; A Aquila; R N Wilke; M R Groves; R Jordanova; V S Lamzin; G Borchers; K Saksl; A V Zozulya; M Sprung; A P Mancuso
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

  7 in total

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