Literature DB >> 25183832

Epigenetic regulation in plant responses to the environment.

David C Baulcombe1, Caroline Dean2.   

Abstract

In this article, we review environmentally mediated epigenetic regulation in plants using two case histories. One of these, vernalization, mediates adaptation of plants to different environments and it exemplifies processes that are reset in each generation. The other, virus-induced silencing, involves transgenerationally inherited epigenetic modifications. Heritable epigenetic marks may result in heritable phenotypic variation, influencing fitness, and so be subject to natural selection. However, unlike genetic inheritance, the epigenetic modifications show instability and are influenced by the environment. These two case histories are then compared with other phenomena in plant biology that are likely to represent epigenetic regulation in response to the environment.
Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID: 25183832      PMCID: PMC4142964          DOI: 10.1101/cshperspect.a019471

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  97 in total

1.  Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells.

Authors:  Attila Molnar; Charles W Melnyk; Andrew Bassett; Thomas J Hardcastle; Ruth Dunn; David C Baulcombe
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2.  The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.

Authors:  Ericka R Havecker; Laura M Wallbridge; Thomas J Hardcastle; Maxwell S Bush; Krystyna A Kelly; Ruth M Dunn; Frank Schwach; John H Doonan; David C Baulcombe
Journal:  Plant Cell       Date:  2010-02-19       Impact factor: 11.277

3.  RNA interference: big applause for silencing in Stockholm.

Authors:  Phillip D Zamore
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

Review 4.  Epigenetics of ciliates.

Authors:  Douglas L Chalker; Eric Meyer; Kazufumi Mochizuki
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

5.  An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors:  Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

6.  FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering.

Authors:  S D Michaels; R M Amasino
Journal:  Plant Cell       Date:  1999-05       Impact factor: 11.277

7.  High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance.

Authors:  Rui Lu; Isabelle Malcuit; Peter Moffett; Maria T Ruiz; Jack Peart; Ai-Jiuan Wu; John P Rathjen; Abdelhafid Bendahmane; Louise Day; David C Baulcombe
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

8.  LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.

Authors:  Joshua S Mylne; Lynne Barrett; Federico Tessadori; Stéphane Mesnage; Lianna Johnson; Yana V Bernatavichute; Steven E Jacobsen; Paul Fransz; Caroline Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-20       Impact factor: 11.205

Review 9.  DNA methylation and cancer.

Authors:  P W Laird; R Jaenisch
Journal:  Hum Mol Genet       Date:  1994       Impact factor: 6.150

10.  Transgenerational effects of stress exposure on offspring phenotypes in apomictic dandelion.

Authors:  Koen J F Verhoeven; Thomas P van Gurp
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

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  70 in total

Review 1.  Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila.

Authors:  Sarah C R Elgin; Gunter Reuter
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

Review 2.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 3.  Transcriptional silencing by polycomb-group proteins.

Authors:  Ueli Grossniklaus; Renato Paro
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-11-03       Impact factor: 10.005

Review 4.  Histone variants and epigenetics.

Authors:  Steven Henikoff; M Mitchell Smith
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-01-05       Impact factor: 10.005

Review 5.  Epigenetics in the plant-virus interaction.

Authors:  Chenguang Wang; Chaonan Wang; Jingze Zou; Yunshu Yang; Zhihong Li; Shuifang Zhu
Journal:  Plant Cell Rep       Date:  2019-05-07       Impact factor: 4.570

Review 6.  Phytopathogen-induced changes to plant methylomes.

Authors:  Tarek Hewezi; Vince Pantalone; Morgan Bennett; C Neal Stewart; Tessa M Burch-Smith
Journal:  Plant Cell Rep       Date:  2017-07-29       Impact factor: 4.570

Review 7.  Photoperiod- and temperature-mediated control of growth cessation and dormancy in trees: a molecular perspective.

Authors:  Jay P Maurya; Rishikesh P Bhalerao
Journal:  Ann Bot       Date:  2017-09-01       Impact factor: 4.357

8.  Molecular biology: A liquid reservoir for silent chromatin.

Authors:  Adam Klosin; Anthony A Hyman
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

9.  Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce.

Authors:  Igor A Yakovlev; Elena Carneros; YeonKyeong Lee; Jorunn E Olsen; Carl Gunnar Fossdal
Journal:  Planta       Date:  2016-02-19       Impact factor: 4.116

Review 10.  Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.

Authors:  Nathan M Springer; Damon Lisch; Qing Li
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

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