Literature DB >> 25172464

Zebrafish as a model to study the role of DNA methylation in environmental toxicology.

Jorke H Kamstra1, Peter Aleström2, Jan M Kooter3, Juliette Legler4.   

Abstract

Environmental epigenetics is a rapidly growing field which studies the effects of environmental factors such as nutrition, stress, and exposure to compounds on epigenetic gene regulation. Recent studies have shown that exposure to toxicants in vertebrates is associated with changes in DNA methylation, a major epigenetic mechanism affecting gene transcription. Zebra fish, a well-known model in toxicology and developmental biology, are emerging as a model species in environmental epigenetics despite their evolutionary distance to rodents and humans. In this review, recent insights in DNA methylation during zebra fish development are discussed and compared to mammalian models in order to evaluate zebra fish as a model to study the role of DNA methylation in environmental toxicology. Differences exist in DNA methylation reprogramming during early development, whereas in later developmental stages, tissue distribution of both 5-methylcytosine and 5-hydroxymethylcytosine seems more conserved between species, as well as basic DNA (de)methylation mechanisms. All DNA methyl transferases identified so far in mammals are present in zebra fish, as well as a number of major demethylation pathways. However, zebra fish appear to lack some methylation pathways present in mammals, such as parental imprinting. Several studies report effects on DNA methylation in zebra fish following exposure to environmental contaminants, such as arsenic, benzo[a]pyrene, and tris(1,3-dichloro-2-propyl)phosphate. Though more research is needed to examine heritable effects of contaminant exposure on DNA methylation, recent data suggests the usefulness of the zebra fish as a model in environmental epigenetics.

Entities:  

Keywords:  5-Hydroxymethylcytosine; 5-Methylcytosine; Development; Environmental epigenetics; Environmental toxicology; Transgenerational effects; Zebra fish

Mesh:

Substances:

Year:  2014        PMID: 25172464     DOI: 10.1007/s11356-014-3466-7

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  98 in total

1.  Epigenetic complexity during the zebrafish mid-blastula transition.

Authors:  Ingrid S Andersen; Olga Ostrup; Leif C Lindeman; Håvard Aanes; Andrew H Reiner; Sinnakaruppan Mathavan; Peter Aleström; Philippe Collas
Journal:  Biochem Biophys Res Commun       Date:  2011-12-22       Impact factor: 3.575

2.  Transcriptome-wide analysis of small RNA expression in early zebrafish development.

Authors:  Chunyao Wei; Leonidas Salichos; Carli M Wittgrove; Antonis Rokas; James G Patton
Journal:  RNA       Date:  2012-03-08       Impact factor: 4.942

3.  Redefining CpG islands using hidden Markov models.

Authors:  Hao Wu; Brian Caffo; Harris A Jaffee; Rafael A Irizarry; Andrew P Feinberg
Journal:  Biostatistics       Date:  2010-03-08       Impact factor: 5.899

4.  Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens.

Authors:  Rachel K Tittle; Ryan Sze; Anthony Ng; Richard J Nuckels; Mary E Swartz; Ryan M Anderson; Justin Bosch; Didier Y R Stainier; Johann K Eberhart; Jeffrey M Gross
Journal:  Dev Biol       Date:  2010-11-30       Impact factor: 3.582

Review 5.  Bivalent histone modifications in early embryogenesis.

Authors:  Nadine L Vastenhouw; Alexander F Schier
Journal:  Curr Opin Cell Biol       Date:  2012-04-17       Impact factor: 8.382

6.  Neonatal diethylstilbestrol exposure induces persistent elevation of c-fos expression and hypomethylation in its exon-4 in mouse uterus.

Authors:  Shuanfang Li; Roberta Hansman; Retha Newbold; Barbara Davis; John A McLachlan; J Carl Barrett
Journal:  Mol Carcinog       Date:  2003-10       Impact factor: 4.784

7.  Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during development.

Authors:  Kunal Rai; Lincoln D Nadauld; Stephanie Chidester; Elizabeth J Manos; Smitha R James; Adam R Karpf; Bradley R Cairns; David A Jones
Journal:  Mol Cell Biol       Date:  2006-10       Impact factor: 4.272

8.  Tiling histone H3 lysine 4 and 27 methylation in zebrafish using high-density microarrays.

Authors:  Leif C Lindeman; Andrew H Reiner; Sinnakaruppan Mathavan; Peter Aleström; Philippe Collas
Journal:  PLoS One       Date:  2010-12-20       Impact factor: 3.240

9.  Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.

Authors:  Daniel Globisch; Martin Münzel; Markus Müller; Stylianos Michalakis; Mirko Wagner; Susanne Koch; Tobias Brückl; Martin Biel; Thomas Carell
Journal:  PLoS One       Date:  2010-12-23       Impact factor: 3.240

10.  Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern.

Authors:  Magdalena E Potok; David A Nix; Timothy J Parnell; Bradley R Cairns
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582

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  19 in total

1.  Danio rerio as a model in aquatic toxicology and sediment research.

Authors:  H Hollert; Steffen H Keiter
Journal:  Environ Sci Pollut Res Int       Date:  2015-09-15       Impact factor: 4.223

2.  The Role of Epigenomics in Aquatic Toxicology.

Authors:  Susanne M Brander; Adam D Biales; Richard E Connon
Journal:  Environ Toxicol Chem       Date:  2017-10       Impact factor: 3.742

3.  Application of epigenetic data in human health risk assessment.

Authors:  Ila L Cote; Shaun D McCullough; Ronald N Hines; John J Vandenberg
Journal:  Curr Opin Toxicol       Date:  2017-11-06

4.  Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish.

Authors:  Andrea L Knecht; Lisa Truong; Skylar W Marvel; David M Reif; Abraham Garcia; Catherine Lu; Michael T Simonich; Justin G Teeguarden; Robert L Tanguay
Journal:  Toxicol Appl Pharmacol       Date:  2017-06-03       Impact factor: 4.219

5.  Sequence Variations in pxr (nr1i2) From Zebrafish (Danio rerio) Strains Affect Nuclear Receptor Function.

Authors:  Roger Lille-Langøy; Odd André Karlsen; Line Merethe Myklebust; Jared V Goldstone; Astrid Mork-Jansson; Rune Male; Bruce Blumberg; John J Stegeman; Anders Goksøyr
Journal:  Toxicol Sci       Date:  2019-03-01       Impact factor: 4.849

6.  BPA-Induced Deregulation Of Epigenetic Patterns: Effects On Female Zebrafish Reproduction.

Authors:  Stefania Santangeli; Francesca Maradonna; Giorgia Gioacchini; Gilda Cobellis; Chiara Carla Piccinetti; Luisa Dalla Valle; Oliana Carnevali
Journal:  Sci Rep       Date:  2016-02-25       Impact factor: 4.379

7.  DNA methyltransferases and stress-related genes expression in zebrafish larvae after exposure to heat and copper during reprogramming of DNA methylation.

Authors:  Jennifer Dorts; Elodie Falisse; Emilie Schoofs; Enora Flamion; Patrick Kestemont; Frédéric Silvestre
Journal:  Sci Rep       Date:  2016-10-12       Impact factor: 4.379

Review 8.  Environmentally induced epigenetic toxicity: potential public health concerns.

Authors:  Emma L Marczylo; Miriam N Jacobs; Timothy W Gant
Journal:  Crit Rev Toxicol       Date:  2016-06-09       Impact factor: 5.635

9.  Microencapsulated fluorescent pH probe as implantable sensor for monitoring the physiological state of fish embryos.

Authors:  Anton Gurkov; Anton Sadovoy; Ekaterina Shchapova; Cathleen Teh; Igor Meglinski; Maxim Timofeyev
Journal:  PLoS One       Date:  2017-10-18       Impact factor: 3.240

10.  High Resolution Imaging of DNA Methylation Dynamics using a Zebrafish Reporter.

Authors:  Ranran Zhang; Lian Liu; Yuxiao Yao; Fei Fei; Feng Wang; Qian Yang; Yonghao Gui; Xu Wang
Journal:  Sci Rep       Date:  2017-07-14       Impact factor: 4.379

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