Literature DB >> 22513113

Bivalent histone modifications in early embryogenesis.

Nadine L Vastenhouw1, Alexander F Schier.   

Abstract

Histone modifications influence the interactions of transcriptional regulators with chromatin. Studies in embryos and embryonic stem (ES) cells have uncovered histone modification patterns that are diagnostic for different cell types and developmental stages. For example, bivalent domains consisting of regions of H3 lysine 27 trimethylation (H3K27me3) and H3 lysine 4 trimethylation (H3K4me3) mark lineage control genes in ES cells and zebrafish blastomeres. Such bivalent domains have garnered attention because the H3K27me3 mark might help repress lineage-regulatory genes during pluripotency while the H3K4me3 mark could poise genes for activation upon differentiation. Despite the prominence of the bivalent domain concept, studies in other model organisms have questioned its universal nature, and the function of bivalent domains has remained unclear. Histone marks are also associated with developmental regulatory genes in sperm. These observations have raised the possibility that specific histone modification patterns might persist from parent to offspring, but it is unclear whether histone marks are inherited or formed de novo. Here, we review the potential roles of H3K4me3 and H3K27me3 marks in embryos and ES cells and discuss how histone marks might be established, maintained and resolved during embryonic development.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22513113      PMCID: PMC3372573          DOI: 10.1016/j.ceb.2012.03.009

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  150 in total

1.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.

Authors:  Stéphane Bertani; Silvia Sauer; Eugene Bolotin; Frank Sauer
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

6.  The Polycomb-group homolog Bmi-1 is a regulator of murine Hox gene expression.

Authors:  N M van der Lugt; M Alkema; A Berns; J Deschamps
Journal:  Mech Dev       Date:  1996-08       Impact factor: 1.882

7.  Rnf2 (Ring1b) deficiency causes gastrulation arrest and cell cycle inhibition.

Authors:  Jan Willem Voncken; Bernard A J Roelen; Mieke Roefs; Stijn de Vries; Els Verhoeven; Silvia Marino; Jacqueline Deschamps; Maarten van Lohuizen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-14       Impact factor: 11.205

8.  Polycomb complexes act redundantly to repress genomic repeats and genes.

Authors:  Martin Leeb; Diego Pasini; Maria Novatchkova; Markus Jaritz; Kristian Helin; Anton Wutz
Journal:  Genes Dev       Date:  2010-02-01       Impact factor: 11.361

9.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

10.  GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Authors:  Eric M Mendenhall; Richard P Koche; Thanh Truong; Vicky W Zhou; Biju Issac; Andrew S Chi; Manching Ku; Bradley E Bernstein
Journal:  PLoS Genet       Date:  2010-12-09       Impact factor: 5.917

View more
  111 in total

1.  Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation.

Authors:  Rodrigo A Grandy; Troy W Whitfield; Hai Wu; Mark P Fitzgerald; Jennifer J VanOudenhove; Sayyed K Zaidi; Martin A Montecino; Jane B Lian; André J van Wijnen; Janet L Stein; Gary S Stein
Journal:  Mol Cell Biol       Date:  2015-12-07       Impact factor: 4.272

Review 2.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

Review 3.  Blastocyst-Derived Stem Cell Populations under Stress: Impact of Nutrition and Metabolism on Stem Cell Potency Loss and Miscarriage.

Authors:  Yu Yang; Alan Bolnick; Alexandra Shamir; Mohammed Abdulhasan; Quanwen Li; G C Parker; Elizabeth E Puscheck; D A Rappolee
Journal:  Stem Cell Rev Rep       Date:  2017-08       Impact factor: 5.739

4.  DNA methylation variations are required for epithelial-to-mesenchymal transition induced by cancer-associated fibroblasts in prostate cancer cells.

Authors:  C Pistore; E Giannoni; T Colangelo; F Rizzo; E Magnani; L Muccillo; G Giurato; M Mancini; S Rizzo; M Riccardi; N Sahnane; V Del Vescovo; K Kishore; M Mandruzzato; F Macchi; M Pelizzola; M A Denti; D Furlan; A Weisz; V Colantuoni; P Chiarugi; I M Bonapace
Journal:  Oncogene       Date:  2017-06-05       Impact factor: 9.867

Review 5.  Stress - (self) eating: Epigenetic regulation of autophagy in response to psychological stress.

Authors:  Deepika Puri; Deepa Subramanyam
Journal:  FEBS J       Date:  2019-04-04       Impact factor: 5.542

Review 6.  Chromatin-linked determinants of zygotic genome activation.

Authors:  Olga Østrup; Ingrid S Andersen; Philippe Collas
Journal:  Cell Mol Life Sci       Date:  2012-09-11       Impact factor: 9.261

Review 7.  Epigenetic regulation of memory formation and maintenance.

Authors:  Iva B Zovkic; Mikael C Guzman-Karlsson; J David Sweatt
Journal:  Learn Mem       Date:  2013-01-15       Impact factor: 2.460

8.  H3F3A K27M mutations in thalamic gliomas from young adult patients.

Authors:  Koki Aihara; Akitake Mukasa; Kengo Gotoh; Kuniaki Saito; Genta Nagae; Shingo Tsuji; Kenji Tatsuno; Shogo Yamamoto; Shunsaku Takayanagi; Yoshitaka Narita; Soichiro Shibui; Hiroyuki Aburatani; Nobuhito Saito
Journal:  Neuro Oncol       Date:  2013-11-26       Impact factor: 12.300

9.  Global H3K4me3 genome mapping reveals alterations of innate immunity signaling and overexpression of JMJD3 in human myelodysplastic syndrome CD34+ cells.

Authors:  Y Wei; R Chen; S Dimicoli; C Bueso-Ramos; D Neuberg; S Pierce; H Wang; H Yang; Y Jia; H Zheng; Z Fang; M Nguyen; I Ganan-Gomez; B Ebert; R Levine; H Kantarjian; G Garcia-Manero
Journal:  Leukemia       Date:  2013-03-29       Impact factor: 11.528

Review 10.  Long-term effects of chromatin remodeling and DNA damage in stem cells induced by environmental and dietary agents.

Authors:  Bhawana Bariar; C Greer Vestal; Christine Richardson
Journal:  J Environ Pathol Toxicol Oncol       Date:  2013       Impact factor: 3.567

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.