Literature DB >> 25171654

Replication protein A: single-stranded DNA's first responder: dynamic DNA-interactions allow replication protein A to direct single-strand DNA intermediates into different pathways for synthesis or repair.

Ran Chen1, Marc S Wold.   

Abstract

Replication protein A (RPA), the major single-stranded DNA-binding protein in eukaryotic cells, is required for processing of single-stranded DNA (ssDNA) intermediates found in replication, repair, and recombination. Recent studies have shown that RPA binding to ssDNA is highly dynamic and that more than high-affinity binding is needed for function. Analysis of DNA binding mutants identified forms of RPA with reduced affinity for ssDNA that are fully active, and other mutants with higher affinity that are inactive. Single molecule studies showed that while RPA binds ssDNA with high affinity, the RPA complex can rapidly diffuse along ssDNA and be displaced by other proteins that act on ssDNA. Finally, dynamic DNA binding allows RPA to prevent error-prone repair of double-stranded breaks and promote error-free repair. Together, these findings suggest a new paradigm where RPA acts as a first responder at sites with ssDNA, thereby actively coordinating DNA repair and DNA synthesis.
© 2014 WILEY Periodicals, Inc.

Entities:  

Keywords:  DNA repair; DNA replication; DNA-interactions; recombination; single-strand DNA-binding protein

Mesh:

Substances:

Year:  2014        PMID: 25171654      PMCID: PMC4629251          DOI: 10.1002/bies.201400107

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  65 in total

1.  Functional characterization of a cancer causing mutation in human replication protein A.

Authors:  Cathy S Hass; Lokesh Gakhar; Marc S Wold
Journal:  Mol Cancer Res       Date:  2010-06-29       Impact factor: 5.852

Review 2.  More forks on the road to replication stress recovery.

Authors:  Chris Allen; Amanda K Ashley; Robert Hromas; Jac A Nickoloff
Journal:  J Mol Cell Biol       Date:  2011-02       Impact factor: 6.216

Review 3.  Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism.

Authors:  M S Wold
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

Review 4.  DNA end resection--unraveling the tail.

Authors:  Eleni P Mimitou; Lorraine S Symington
Journal:  DNA Repair (Amst)       Date:  2011-01-11

5.  BID binds to replication protein A and stimulates ATR function following replicative stress.

Authors:  Yang Liu; Sivaraja Vaithiyalingam; Qiong Shi; Walter J Chazin; Sandra S Zinkel
Journal:  Mol Cell Biol       Date:  2011-08-22       Impact factor: 4.272

6.  Regulation of DNA repair through deSUMOylation and SUMOylation of replication protein A complex.

Authors:  Hong Dou; Chao Huang; Melissa Singh; Phillip B Carpenter; Edward T H Yeh
Journal:  Mol Cell       Date:  2010-08-13       Impact factor: 17.970

7.  DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repair.

Authors:  W L de Laat; E Appeldoorn; K Sugasawa; E Weterings; N G Jaspers; J H Hoeijmakers
Journal:  Genes Dev       Date:  1998-08-15       Impact factor: 11.361

Review 8.  Replication protein A: directing traffic at the intersection of replication and repair.

Authors:  Greg G Oakley; Steve M Patrick
Journal:  Front Biosci (Landmark Ed)       Date:  2010-06-01

9.  Increased RPA1 gene dosage affects genomic stability potentially contributing to 17p13.3 duplication syndrome.

Authors:  Emily Outwin; Gillian Carpenter; Weimin Bi; Marjorie A Withers; James R Lupski; Mark O'Driscoll
Journal:  PLoS Genet       Date:  2011-08-25       Impact factor: 5.917

10.  DNA-PK-dependent RPA2 hyperphosphorylation facilitates DNA repair and suppresses sister chromatid exchange.

Authors:  Hungjiun Liaw; Deokjae Lee; Kyungjae Myung
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

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  107 in total

1.  Small-molecule inhibitors identify the RAD52-ssDNA interaction as critical for recovery from replication stress and for survival of BRCA2 deficient cells.

Authors:  Sarah R Hengel; Eva Malacaria; Laura Folly da Silva Constantino; Fletcher E Bain; Andrea Diaz; Brandon G Koch; Liping Yu; Meng Wu; Pietro Pichierri; M Ashley Spies; Maria Spies
Journal:  Elife       Date:  2016-07-19       Impact factor: 8.140

2.  RADX controls RAD51 filament dynamics to regulate replication fork stability.

Authors:  Madison B Adolph; Taha M Mohamed; Swati Balakrishnan; Chaoyou Xue; Florian Morati; Mauro Modesti; Eric C Greene; Walter J Chazin; David Cortez
Journal:  Mol Cell       Date:  2021-01-15       Impact factor: 17.970

3.  Protein Environment and DNA Orientation Affect Protein-Induced Cy3 Fluorescence Enhancement.

Authors:  Binh Nguyen; Monika A Ciuba; Alexander G Kozlov; Marcia Levitus; Timothy M Lohman
Journal:  Biophys J       Date:  2019-06-07       Impact factor: 4.033

4.  Using microsecond single-molecule FRET to determine the assembly pathways of T4 ssDNA binding protein onto model DNA replication forks.

Authors:  Carey Phelps; Brett Israels; Davis Jose; Morgan C Marsh; Peter H von Hippel; Andrew H Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

5.  Next-Generation DNA Curtains for Single-Molecule Studies of Homologous Recombination.

Authors:  Michael M Soniat; Logan R Myler; Jeffrey M Schaub; Yoori Kim; Ignacio F Gallardo; Ilya J Finkelstein
Journal:  Methods Enzymol       Date:  2017-04-17       Impact factor: 1.600

Review 6.  Biochemical attributes of mitotic and meiotic presynaptic complexes.

Authors:  J Brooks Crickard; Eric C Greene
Journal:  DNA Repair (Amst)       Date:  2018-08-23

Review 7.  Eukaryotic resectosomes: A single-molecule perspective.

Authors:  Logan R Myler; Ilya J Finkelstein
Journal:  Prog Biophys Mol Biol       Date:  2016-08-03       Impact factor: 3.667

8.  Shared Subunits of Tetrahymena Telomerase Holoenzyme and Replication Protein A Have Different Functions in Different Cellular Complexes.

Authors:  Heather E Upton; Henry Chan; Juli Feigon; Kathleen Collins
Journal:  J Biol Chem       Date:  2016-11-28       Impact factor: 5.157

9.  Tying up the Ends: Plasticity in the Recognition of Single-Stranded DNA at Telomeres.

Authors:  Neil R Lloyd; Thayne H Dickey; Robert A Hom; Deborah S Wuttke
Journal:  Biochemistry       Date:  2016-09-15       Impact factor: 3.162

10.  Two Distinct Pathways Support Gene Correction by Single-Stranded Donors at DNA Nicks.

Authors:  Luther Davis; Nancy Maizels
Journal:  Cell Rep       Date:  2016-11-08       Impact factor: 9.423

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