Literature DB >> 25162803

An evolutionary genomic tale of two rice species.

Michael D Purugganan1.   

Abstract

The domestication of African rice, Oryza glaberrima, occurred separately from that of the much more widespread Asian rice species Oryza sativa. Analysis of the whole-genome sequence for O. glaberrima shows the extent to which the same genes were involved in these distinct but parallel evolutionary events.

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Year:  2014        PMID： 25162803     DOI： 10.1038/ng.3071

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  11 in total

Review 1.  African rice (Oryza glaberrima): history and future potential.

Authors:  Olga F Linares
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

2.  An SNP caused loss of seed shattering during rice domestication.

Authors:  Saeko Konishi; Takeshi Izawa; Shao Yang Lin; Kaworu Ebana; Yoshimichi Fukuta; Takuji Sasaki; Masahiro Yano
Journal:  Science       Date:  2006-04-13       Impact factor: 47.728

3.  Natural variation at the DEP1 locus enhances grain yield in rice.

Authors:  Xianzhong Huang; Qian Qian; Zhengbin Liu; Hongying Sun; Shuyuan He; Da Luo; Guangmin Xia; Chengcai Chu; Jiayang Li; Xiangdong Fu
Journal:  Nat Genet       Date:  2009-03-22       Impact factor: 38.330

Review 4.  Evolution of crop species: genetics of domestication and diversification.

Authors:  Rachel S Meyer; Michael D Purugganan
Journal:  Nat Rev Genet       Date:  2013-12       Impact factor: 53.242

5.  Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.

Authors:  Abhijit Sanyal; Jetty S S Ammiraju; Fei Lu; Yeisoo Yu; Teri Rambo; Jennifer Currie; Kristi Kollura; Hye-Ran Kim; Jinfeng Chen; Jianxin Ma; Phillip San Miguel; Chen Mingsheng; Rod A Wing; Scott A Jackson
Journal:  Mol Biol Evol       Date:  2010-06-03       Impact factor: 16.240

6.  Molecular evidence for a single evolutionary origin of domesticated rice.

Authors:  Jeanmaire Molina; Martin Sikora; Nandita Garud; Jonathan M Flowers; Samara Rubinstein; Andy Reynolds; Pu Huang; Scott Jackson; Barbara A Schaal; Carlos D Bustamante; Adam R Boyko; Michael D Purugganan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-02       Impact factor: 11.205

7.  Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene.

Authors:  Wolfgang Spielmeyer; Marc H Ellis; Peter M Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

8.  Rice domestication by reducing shattering.

Authors:  Changbao Li; Ailing Zhou; Tao Sang
Journal:  Science       Date:  2006-03-09       Impact factor: 47.728

9.  Parallel domestication of the Shattering1 genes in cereals.

Authors:  Zhongwei Lin; Xianran Li; Laura M Shannon; Cheng-Ting Yeh; Ming L Wang; Guihua Bai; Zhao Peng; Jiarui Li; Harold N Trick; Thomas E Clemente; John Doebley; Patrick S Schnable; Mitchell R Tuinstra; Tesfaye T Tesso; Frank White; Jianming Yu
Journal:  Nat Genet       Date:  2012-05-13       Impact factor: 38.330

10.  The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

Authors:  Muhua Wang; Yeisoo Yu; Georg Haberer; Pradeep Reddy Marri; Chuanzhu Fan; Jose Luis Goicoechea; Andrea Zuccolo; Xiang Song; Dave Kudrna; Jetty S S Ammiraju; Rosa Maria Cossu; Carlos Maldonado; Jinfeng Chen; Seunghee Lee; Nick Sisneros; Kristi de Baynast; Wolfgang Golser; Marina Wissotski; Woojin Kim; Paul Sanchez; Marie-Noelle Ndjiondjop; Kayode Sanni; Manyuan Long; Judith Carney; Olivier Panaud; Thomas Wicker; Carlos A Machado; Mingsheng Chen; Klaus F X Mayer; Steve Rounsley; Rod A Wing
Journal:  Nat Genet       Date:  2014-07-27       Impact factor: 38.330
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  6 in total

1.  Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

Authors:  Kanako Bessho-Uehara; Diane R Wang; Tomoyuki Furuta; Anzu Minami; Keisuke Nagai; Rico Gamuyao; Kenji Asano; Rosalyn B Angeles-Shim; Yoshihiro Shimizu; Madoka Ayano; Norio Komeda; Kazuyuki Doi; Kotaro Miura; Yosuke Toda; Toshinori Kinoshita; Satohiro Okuda; Tetsuya Higashiyama; Mika Nomoto; Yasuomi Tada; Hidefumi Shinohara; Yoshikatsu Matsubayashi; Anthony Greenberg; Jianzhong Wu; Hideshi Yasui; Atsushi Yoshimura; Hitoshi Mori; Susan R McCouch; Motoyuki Ashikari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

2.  Processes Driving the Adaptive Radiation of a Tropical Tree (Diospyros, Ebenaceae) in New Caledonia, a Biodiversity Hotspot.

Authors:  Ovidiu Paun; Barbara Turner; Emiliano Trucchi; Jérôme Munzinger; Mark W Chase; Rosabelle Samuel
Journal:  Syst Biol       Date:  2015-10-01       Impact factor: 15.683

Review 3.  An overview on reproductive isolation in Oryza sativa complex.

Authors:  Sadia Nadir; Sehroon Khan; Qian Zhu; Doku Henry; Li Wei; Dong Sun Lee; LiJuan Chen
Journal:  AoB Plants       Date:  2018-11-22       Impact factor: 3.276

Review 4.  Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication.

Authors:  Peterson W Wambugu; Marie-Noelle Ndjiondjop; Robert Henry
Journal:  Rice (N Y)       Date:  2021-01-07       Impact factor: 4.783

Review 5.  Photoperiod Control of Plant Growth: Flowering Time Genes Beyond Flowering.

Authors:  Michela Osnato; Ignacio Cota; Poonam Nebhnani; Unai Cereijo; Soraya Pelaz
Journal:  Front Plant Sci       Date:  2022-02-09       Impact factor: 5.753

Review 6.  Back to the Wild: On a Quest for Donors Toward Salinity Tolerant Rice.

Authors:  Celymar A Solis; Miing T Yong; Ricky Vinarao; Kshirod Jena; Paul Holford; Lana Shabala; Meixue Zhou; Sergey Shabala; Zhong-Hua Chen
Journal:  Front Plant Sci       Date:  2020-03-20       Impact factor: 5.753
  6 in total

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