| Literature DB >> 25161586 |
Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Bahgat R M Hussein4, Mustafa R Albayati5.
Abstract
In the title compound, C14H13N5OS, the dihedral angle between the fused ring system (r.m.s. deviation = 0.028 Å) and the phenyl ring is 48.24 (4)°. The mol-ecule features both an intra-molecular N-H⋯O and an N-H⋯N hydrogen bond. In the crystal, mol-ecules are linked by N-H⋯O and N-H⋯N hydrogen bonds, generating a three-dimensional network. A weak N-H⋯π inter-action is also observed.Entities:
Keywords: crystal structure
Year: 2014 PMID: 25161586 PMCID: PMC4120554 DOI: 10.1107/S1600536814013981
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H13N5OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9996 reflections |
| θ = 2.6–29.1° | |
| µ = 0.25 mm−1 | |
| β = 93.969 (2)° | Block, colourless |
| 0.21 × 0.13 × 0.09 mm | |
| Bruker SMART APEX CCD diffractometer | 3500 independent reflections |
| Radiation source: fine-focus sealed tube | 3017 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3660 pixels mm-1 | θmax = 29.1°, θmin = 1.9° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 24103 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3500 reflections | Δρmax = 0.42 e Å−3 |
| 190 parameters | Δρmin = −0.25 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| S1 | 0.40493 (6) | 0.35471 (2) | 0.83539 (3) | 0.0168 (1) | |
| O1 | 0.6615 (2) | 0.47538 (5) | 0.61593 (8) | 0.0249 (3) | |
| N1 | 0.0339 (2) | 0.26672 (5) | 0.82888 (9) | 0.0169 (3) | |
| N2 | −0.2636 (2) | 0.18599 (6) | 0.82055 (10) | 0.0230 (3) | |
| N3 | −0.1968 (2) | 0.31627 (6) | 0.49527 (10) | 0.0220 (3) | |
| N4 | 0.2168 (2) | 0.41258 (6) | 0.52579 (9) | 0.0209 (3) | |
| N5 | 0.7313 (2) | 0.47187 (6) | 0.80636 (10) | 0.0196 (3) | |
| C1 | −0.1541 (3) | 0.23617 (6) | 0.76882 (11) | 0.0168 (3) | |
| C2 | −0.2385 (3) | 0.25273 (6) | 0.65898 (11) | 0.0170 (3) | |
| C3 | −0.1212 (3) | 0.30131 (6) | 0.60362 (11) | 0.0161 (3) | |
| C4 | 0.0807 (2) | 0.33451 (6) | 0.66470 (10) | 0.0150 (3) | |
| C5 | 0.1430 (2) | 0.31391 (6) | 0.77427 (10) | 0.0149 (3) | |
| C6 | 0.2455 (3) | 0.38441 (6) | 0.63091 (11) | 0.0157 (3) | |
| C7 | 0.4308 (3) | 0.40001 (6) | 0.71359 (10) | 0.0163 (3) | |
| C8 | 0.6148 (3) | 0.45111 (6) | 0.70611 (11) | 0.0172 (3) | |
| C9 | 0.9058 (3) | 0.52266 (6) | 0.82104 (11) | 0.0178 (3) | |
| C10 | 1.0866 (3) | 0.53587 (7) | 0.74444 (12) | 0.0199 (4) | |
| C11 | 1.2629 (3) | 0.58416 (7) | 0.76735 (14) | 0.0245 (4) | |
| C12 | 1.2616 (3) | 0.61978 (7) | 0.86512 (14) | 0.0261 (4) | |
| C13 | 1.0791 (3) | 0.60708 (7) | 0.94063 (13) | 0.0236 (4) | |
| C14 | 0.9013 (3) | 0.55895 (7) | 0.91876 (12) | 0.0207 (4) | |
| H2 | −0.37710 | 0.23050 | 0.62220 | 0.0200* | |
| H2A | −0.17740 | 0.16940 | 0.88230 | 0.0280* | |
| H2B | −0.36030 | 0.15820 | 0.77790 | 0.0280* | |
| H3A | −0.29050 | 0.28560 | 0.45810 | 0.0260* | |
| H3B | −0.07270 | 0.33330 | 0.45530 | 0.0260* | |
| H4A | 0.05280 | 0.42370 | 0.50670 | 0.0250* | |
| H4B | 0.33410 | 0.44320 | 0.51430 | 0.0250* | |
| H5A | 0.66340 | 0.45840 | 0.87010 | 0.0230* | |
| H10 | 1.08930 | 0.51200 | 0.67710 | 0.0240* | |
| H11 | 1.38620 | 0.59300 | 0.71530 | 0.0290* | |
| H12 | 1.38390 | 0.65240 | 0.88020 | 0.0310* | |
| H13 | 1.07580 | 0.63140 | 1.00740 | 0.0280* | |
| H14 | 0.77650 | 0.55070 | 0.97040 | 0.0250* |
| S1 | 0.0174 (2) | 0.0186 (2) | 0.0138 (2) | −0.0032 (1) | −0.0034 (1) | 0.0018 (1) |
| O1 | 0.0273 (6) | 0.0270 (5) | 0.0196 (5) | −0.0099 (4) | −0.0033 (4) | 0.0059 (4) |
| N1 | 0.0165 (6) | 0.0174 (5) | 0.0167 (5) | −0.0011 (4) | 0.0000 (4) | 0.0018 (4) |
| N2 | 0.0234 (6) | 0.0229 (6) | 0.0223 (6) | −0.0066 (5) | −0.0008 (5) | 0.0051 (5) |
| N3 | 0.0243 (6) | 0.0263 (6) | 0.0147 (5) | −0.0084 (5) | −0.0037 (4) | 0.0006 (5) |
| N4 | 0.0256 (6) | 0.0215 (6) | 0.0151 (5) | −0.0059 (5) | −0.0027 (5) | 0.0044 (4) |
| N5 | 0.0211 (6) | 0.0193 (6) | 0.0180 (5) | −0.0064 (4) | −0.0012 (4) | 0.0003 (4) |
| C1 | 0.0152 (6) | 0.0166 (6) | 0.0187 (6) | 0.0005 (5) | 0.0028 (5) | −0.0001 (5) |
| C2 | 0.0155 (6) | 0.0177 (6) | 0.0175 (6) | −0.0021 (5) | −0.0001 (5) | −0.0016 (5) |
| C3 | 0.0162 (6) | 0.0173 (6) | 0.0145 (6) | 0.0001 (5) | −0.0003 (5) | −0.0015 (5) |
| C4 | 0.0168 (6) | 0.0149 (6) | 0.0131 (6) | −0.0007 (5) | −0.0006 (5) | −0.0002 (4) |
| C5 | 0.0141 (6) | 0.0156 (6) | 0.0145 (6) | −0.0001 (4) | −0.0016 (5) | −0.0011 (4) |
| C6 | 0.0178 (6) | 0.0151 (6) | 0.0140 (5) | −0.0009 (5) | 0.0003 (5) | −0.0005 (4) |
| C7 | 0.0181 (6) | 0.0163 (6) | 0.0142 (6) | −0.0020 (5) | −0.0004 (5) | 0.0019 (5) |
| C8 | 0.0160 (6) | 0.0165 (6) | 0.0188 (6) | −0.0012 (5) | −0.0018 (5) | 0.0004 (5) |
| C9 | 0.0162 (6) | 0.0147 (6) | 0.0218 (6) | −0.0004 (5) | −0.0044 (5) | 0.0019 (5) |
| C10 | 0.0169 (6) | 0.0184 (6) | 0.0242 (7) | 0.0010 (5) | −0.0008 (5) | 0.0001 (5) |
| C11 | 0.0158 (7) | 0.0237 (7) | 0.0338 (8) | −0.0020 (5) | −0.0003 (6) | 0.0045 (6) |
| C12 | 0.0206 (7) | 0.0187 (7) | 0.0375 (8) | −0.0043 (5) | −0.0079 (6) | 0.0019 (6) |
| C13 | 0.0246 (7) | 0.0184 (7) | 0.0264 (7) | −0.0003 (5) | −0.0081 (6) | −0.0020 (5) |
| C14 | 0.0201 (7) | 0.0200 (6) | 0.0214 (6) | −0.0009 (5) | −0.0030 (5) | 0.0000 (5) |
| S1—C5 | 1.7435 (12) | C2—C3 | 1.3866 (19) |
| S1—C7 | 1.7555 (13) | C3—C4 | 1.4312 (19) |
| O1—C8 | 1.2348 (17) | C4—C6 | 1.4383 (18) |
| N1—C1 | 1.3470 (18) | C4—C5 | 1.3994 (17) |
| N1—C5 | 1.3400 (16) | C6—C7 | 1.382 (2) |
| N2—C1 | 1.3712 (18) | C7—C8 | 1.455 (2) |
| N3—C3 | 1.3677 (18) | C9—C10 | 1.396 (2) |
| N4—C6 | 1.3902 (17) | C9—C14 | 1.399 (2) |
| N5—C8 | 1.3812 (18) | C10—C11 | 1.391 (2) |
| N5—C9 | 1.4128 (18) | C11—C12 | 1.391 (2) |
| N2—H2B | 0.9100 | C12—C13 | 1.391 (2) |
| N2—H2A | 0.9100 | C13—C14 | 1.392 (2) |
| N3—H3B | 0.9100 | C2—H2 | 0.9500 |
| N3—H3A | 0.9100 | C10—H10 | 0.9500 |
| N4—H4A | 0.9100 | C11—H11 | 0.9500 |
| N4—H4B | 0.9100 | C12—H12 | 0.9500 |
| N5—H5A | 0.9100 | C13—H13 | 0.9500 |
| C1—C2 | 1.4033 (19) | C14—H14 | 0.9500 |
| C5—S1—C7 | 91.32 (6) | N4—C6—C7 | 125.12 (13) |
| C1—N1—C5 | 114.68 (11) | C4—C6—C7 | 112.50 (11) |
| C8—N5—C9 | 126.43 (12) | C6—C7—C8 | 124.95 (12) |
| C1—N2—H2B | 119.00 | S1—C7—C6 | 112.03 (10) |
| H2A—N2—H2B | 116.00 | S1—C7—C8 | 122.86 (10) |
| C1—N2—H2A | 117.00 | O1—C8—N5 | 121.75 (13) |
| C3—N3—H3B | 115.00 | O1—C8—C7 | 122.24 (12) |
| H3A—N3—H3B | 114.00 | N5—C8—C7 | 116.00 (11) |
| C3—N3—H3A | 114.00 | C10—C9—C14 | 119.56 (13) |
| C6—N4—H4B | 114.00 | N5—C9—C10 | 122.49 (12) |
| H4A—N4—H4B | 115.00 | N5—C9—C14 | 117.90 (13) |
| C6—N4—H4A | 112.00 | C9—C10—C11 | 119.54 (13) |
| C9—N5—H5A | 115.00 | C10—C11—C12 | 121.14 (15) |
| C8—N5—H5A | 117.00 | C11—C12—C13 | 119.21 (14) |
| N1—C1—C2 | 123.80 (12) | C12—C13—C14 | 120.29 (14) |
| N2—C1—C2 | 119.90 (13) | C9—C14—C13 | 120.26 (14) |
| N1—C1—N2 | 116.30 (12) | C1—C2—H2 | 120.00 |
| C1—C2—C3 | 120.54 (13) | C3—C2—H2 | 120.00 |
| N3—C3—C4 | 122.04 (12) | C9—C10—H10 | 120.00 |
| N3—C3—C2 | 120.86 (13) | C11—C10—H10 | 120.00 |
| C2—C3—C4 | 117.10 (12) | C10—C11—H11 | 119.00 |
| C5—C4—C6 | 112.49 (11) | C12—C11—H11 | 119.00 |
| C3—C4—C6 | 130.89 (12) | C11—C12—H12 | 120.00 |
| C3—C4—C5 | 116.52 (11) | C13—C12—H12 | 120.00 |
| S1—C5—C4 | 111.67 (9) | C12—C13—H13 | 120.00 |
| N1—C5—C4 | 127.31 (11) | C14—C13—H13 | 120.00 |
| S1—C5—N1 | 120.92 (9) | C9—C14—H14 | 120.00 |
| N4—C6—C4 | 122.39 (12) | C13—C14—H14 | 120.00 |
| C7—S1—C5—N1 | 176.86 (11) | C6—C4—C5—S1 | −0.75 (14) |
| C7—S1—C5—C4 | 0.24 (10) | C6—C4—C5—N1 | −177.10 (12) |
| C5—S1—C7—C6 | 0.35 (11) | C3—C4—C6—N4 | 4.6 (2) |
| C5—S1—C7—C8 | 175.81 (12) | C3—C4—C6—C7 | −175.08 (13) |
| C5—N1—C1—N2 | 177.57 (11) | C5—C4—C6—N4 | −179.26 (12) |
| C5—N1—C1—C2 | −1.99 (19) | C5—C4—C6—C7 | 1.02 (16) |
| C1—N1—C5—S1 | −175.21 (10) | N4—C6—C7—S1 | 179.46 (11) |
| C1—N1—C5—C4 | 0.84 (18) | N4—C6—C7—C8 | 4.1 (2) |
| C9—N5—C8—O1 | 2.2 (2) | C4—C6—C7—S1 | −0.83 (15) |
| C9—N5—C8—C7 | −176.62 (13) | C4—C6—C7—C8 | −176.18 (13) |
| C8—N5—C9—C10 | −36.6 (2) | S1—C7—C8—O1 | 167.43 (11) |
| C8—N5—C9—C14 | 146.03 (14) | S1—C7—C8—N5 | −13.78 (18) |
| N1—C1—C2—C3 | 2.8 (2) | C6—C7—C8—O1 | −17.7 (2) |
| N2—C1—C2—C3 | −176.78 (13) | C6—C7—C8—N5 | 161.09 (14) |
| C1—C2—C3—N3 | 177.76 (13) | N5—C9—C10—C11 | −176.08 (14) |
| C1—C2—C3—C4 | −2.1 (2) | C14—C9—C10—C11 | 1.2 (2) |
| N3—C3—C4—C5 | −178.88 (12) | N5—C9—C14—C13 | 176.12 (13) |
| N3—C3—C4—C6 | −2.9 (2) | C10—C9—C14—C13 | −1.3 (2) |
| C2—C3—C4—C5 | 1.00 (18) | C9—C10—C11—C12 | −0.3 (2) |
| C2—C3—C4—C6 | 176.98 (14) | C10—C11—C12—C13 | −0.6 (2) |
| C3—C4—C5—S1 | 175.96 (9) | C11—C12—C13—C14 | 0.5 (2) |
| C3—C4—C5—N1 | −0.39 (19) | C12—C13—C14—C9 | 0.5 (2) |
| H··· | ||||
| N2—H2 | 0.91 | 2.52 | 3.2226 (17) | 134 |
| N3—H3 | 0.91 | 2.07 | 2.9398 (17) | 161 |
| N3—H3 | 0.91 | 2.38 | 2.9802 (17) | 124 |
| N3—H3 | 0.91 | 2.41 | 3.2034 (16) | 146 |
| N4—H4 | 0.91 | 2.15 | 2.8387 (16) | 132 |
| N4—H4 | 0.91 | 2.32 | 2.9991 (16) | 132 |
| N2—H2 | 0.91 | 2.56 | 3.4662 (14) | 173 |
Hydrogen-bond geometry (Å, °)
Cg3 is the centroid of the C9–C14 phenyl ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.91 | 2.52 | 3.2226 (17) | 134 |
| N3—H3 | 0.91 | 2.07 | 2.9398 (17) | 161 |
| N3—H3 | 0.91 | 2.38 | 2.9802 (17) | 124 |
| N3—H3 | 0.91 | 2.41 | 3.2034 (16) | 146 |
| N4—H4 | 0.91 | 2.15 | 2.8387 (16) | 132 |
| N4—H4 | 0.91 | 2.32 | 2.9991 (16) | 132 |
| N2—H2 | 0.91 | 2.56 | 3.4662 (14) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .