Literature DB >> 25161586

3,4,6-Tri-amino-N-phenyl-thieno[2,3-b]pyridine-2-carboxamide.

Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Bahgat R M Hussein4, Mustafa R Albayati5.   

Abstract

In the title compound, C14H13N5OS, the dihedral angle between the fused ring system (r.m.s. deviation = 0.028 Å) and the phenyl ring is 48.24 (4)°. The mol-ecule features both an intra-molecular N-H⋯O and an N-H⋯N hydrogen bond. In the crystal, mol-ecules are linked by N-H⋯O and N-H⋯N hydrogen bonds, generating a three-dimensional network. A weak N-H⋯π inter-action is also observed.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25161586      PMCID: PMC4120554          DOI: 10.1107/S1600536814013981

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to thieno­pyridine-containing compounds, see: Boschelli et al. (2008 ▶); Bakhite et al. (2002 ▶); Schnute et al. (2007 ▶).

Experimental

Crystal data

C14H13N5OS M = 299.36 Monoclinic, a = 5.2732 (7) Å b = 21.028 (3) Å c = 11.9777 (16) Å β = 93.969 (2)° V = 1325.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 150 K 0.21 × 0.13 × 0.09 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.85, T max = 0.98 24103 measured reflections 3500 independent reflections 3017 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.101 S = 1.06 3500 reflections 190 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Bruker, 2013 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814013981/hb7235sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013981/hb7235Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013981/hb7235Isup3.cml CCDC reference: 1008299 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H13N5OSF(000) = 624
Mr = 299.36Dx = 1.501 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9996 reflections
a = 5.2732 (7) Åθ = 2.6–29.1°
b = 21.028 (3) ŵ = 0.25 mm1
c = 11.9777 (16) ÅT = 150 K
β = 93.969 (2)°Block, colourless
V = 1325.0 (3) Å30.21 × 0.13 × 0.09 mm
Z = 4
Bruker SMART APEX CCD diffractometer3500 independent reflections
Radiation source: fine-focus sealed tube3017 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
Detector resolution: 8.3660 pixels mm-1θmax = 29.1°, θmin = 1.9°
φ and ω scansh = −6→7
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −28→28
Tmin = 0.85, Tmax = 0.98l = −16→16
24103 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0512P)2 + 0.5972P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
3500 reflectionsΔρmax = 0.42 e Å3
190 parametersΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.40493 (6)0.35471 (2)0.83539 (3)0.0168 (1)
O10.6615 (2)0.47538 (5)0.61593 (8)0.0249 (3)
N10.0339 (2)0.26672 (5)0.82888 (9)0.0169 (3)
N2−0.2636 (2)0.18599 (6)0.82055 (10)0.0230 (3)
N3−0.1968 (2)0.31627 (6)0.49527 (10)0.0220 (3)
N40.2168 (2)0.41258 (6)0.52579 (9)0.0209 (3)
N50.7313 (2)0.47187 (6)0.80636 (10)0.0196 (3)
C1−0.1541 (3)0.23617 (6)0.76882 (11)0.0168 (3)
C2−0.2385 (3)0.25273 (6)0.65898 (11)0.0170 (3)
C3−0.1212 (3)0.30131 (6)0.60362 (11)0.0161 (3)
C40.0807 (2)0.33451 (6)0.66470 (10)0.0150 (3)
C50.1430 (2)0.31391 (6)0.77427 (10)0.0149 (3)
C60.2455 (3)0.38441 (6)0.63091 (11)0.0157 (3)
C70.4308 (3)0.40001 (6)0.71359 (10)0.0163 (3)
C80.6148 (3)0.45111 (6)0.70611 (11)0.0172 (3)
C90.9058 (3)0.52266 (6)0.82104 (11)0.0178 (3)
C101.0866 (3)0.53587 (7)0.74444 (12)0.0199 (4)
C111.2629 (3)0.58416 (7)0.76735 (14)0.0245 (4)
C121.2616 (3)0.61978 (7)0.86512 (14)0.0261 (4)
C131.0791 (3)0.60708 (7)0.94063 (13)0.0236 (4)
C140.9013 (3)0.55895 (7)0.91876 (12)0.0207 (4)
H2−0.377100.230500.622200.0200*
H2A−0.177400.169400.882300.0280*
H2B−0.360300.158200.777900.0280*
H3A−0.290500.285600.458100.0260*
H3B−0.072700.333300.455300.0260*
H4A0.052800.423700.506700.0250*
H4B0.334100.443200.514300.0250*
H5A0.663400.458400.870100.0230*
H101.089300.512000.677100.0240*
H111.386200.593000.715300.0290*
H121.383900.652400.880200.0310*
H131.075800.631401.007400.0280*
H140.776500.550700.970400.0250*
U11U22U33U12U13U23
S10.0174 (2)0.0186 (2)0.0138 (2)−0.0032 (1)−0.0034 (1)0.0018 (1)
O10.0273 (6)0.0270 (5)0.0196 (5)−0.0099 (4)−0.0033 (4)0.0059 (4)
N10.0165 (6)0.0174 (5)0.0167 (5)−0.0011 (4)0.0000 (4)0.0018 (4)
N20.0234 (6)0.0229 (6)0.0223 (6)−0.0066 (5)−0.0008 (5)0.0051 (5)
N30.0243 (6)0.0263 (6)0.0147 (5)−0.0084 (5)−0.0037 (4)0.0006 (5)
N40.0256 (6)0.0215 (6)0.0151 (5)−0.0059 (5)−0.0027 (5)0.0044 (4)
N50.0211 (6)0.0193 (6)0.0180 (5)−0.0064 (4)−0.0012 (4)0.0003 (4)
C10.0152 (6)0.0166 (6)0.0187 (6)0.0005 (5)0.0028 (5)−0.0001 (5)
C20.0155 (6)0.0177 (6)0.0175 (6)−0.0021 (5)−0.0001 (5)−0.0016 (5)
C30.0162 (6)0.0173 (6)0.0145 (6)0.0001 (5)−0.0003 (5)−0.0015 (5)
C40.0168 (6)0.0149 (6)0.0131 (6)−0.0007 (5)−0.0006 (5)−0.0002 (4)
C50.0141 (6)0.0156 (6)0.0145 (6)−0.0001 (4)−0.0016 (5)−0.0011 (4)
C60.0178 (6)0.0151 (6)0.0140 (5)−0.0009 (5)0.0003 (5)−0.0005 (4)
C70.0181 (6)0.0163 (6)0.0142 (6)−0.0020 (5)−0.0004 (5)0.0019 (5)
C80.0160 (6)0.0165 (6)0.0188 (6)−0.0012 (5)−0.0018 (5)0.0004 (5)
C90.0162 (6)0.0147 (6)0.0218 (6)−0.0004 (5)−0.0044 (5)0.0019 (5)
C100.0169 (6)0.0184 (6)0.0242 (7)0.0010 (5)−0.0008 (5)0.0001 (5)
C110.0158 (7)0.0237 (7)0.0338 (8)−0.0020 (5)−0.0003 (6)0.0045 (6)
C120.0206 (7)0.0187 (7)0.0375 (8)−0.0043 (5)−0.0079 (6)0.0019 (6)
C130.0246 (7)0.0184 (7)0.0264 (7)−0.0003 (5)−0.0081 (6)−0.0020 (5)
C140.0201 (7)0.0200 (6)0.0214 (6)−0.0009 (5)−0.0030 (5)0.0000 (5)
S1—C51.7435 (12)C2—C31.3866 (19)
S1—C71.7555 (13)C3—C41.4312 (19)
O1—C81.2348 (17)C4—C61.4383 (18)
N1—C11.3470 (18)C4—C51.3994 (17)
N1—C51.3400 (16)C6—C71.382 (2)
N2—C11.3712 (18)C7—C81.455 (2)
N3—C31.3677 (18)C9—C101.396 (2)
N4—C61.3902 (17)C9—C141.399 (2)
N5—C81.3812 (18)C10—C111.391 (2)
N5—C91.4128 (18)C11—C121.391 (2)
N2—H2B0.9100C12—C131.391 (2)
N2—H2A0.9100C13—C141.392 (2)
N3—H3B0.9100C2—H20.9500
N3—H3A0.9100C10—H100.9500
N4—H4A0.9100C11—H110.9500
N4—H4B0.9100C12—H120.9500
N5—H5A0.9100C13—H130.9500
C1—C21.4033 (19)C14—H140.9500
C5—S1—C791.32 (6)N4—C6—C7125.12 (13)
C1—N1—C5114.68 (11)C4—C6—C7112.50 (11)
C8—N5—C9126.43 (12)C6—C7—C8124.95 (12)
C1—N2—H2B119.00S1—C7—C6112.03 (10)
H2A—N2—H2B116.00S1—C7—C8122.86 (10)
C1—N2—H2A117.00O1—C8—N5121.75 (13)
C3—N3—H3B115.00O1—C8—C7122.24 (12)
H3A—N3—H3B114.00N5—C8—C7116.00 (11)
C3—N3—H3A114.00C10—C9—C14119.56 (13)
C6—N4—H4B114.00N5—C9—C10122.49 (12)
H4A—N4—H4B115.00N5—C9—C14117.90 (13)
C6—N4—H4A112.00C9—C10—C11119.54 (13)
C9—N5—H5A115.00C10—C11—C12121.14 (15)
C8—N5—H5A117.00C11—C12—C13119.21 (14)
N1—C1—C2123.80 (12)C12—C13—C14120.29 (14)
N2—C1—C2119.90 (13)C9—C14—C13120.26 (14)
N1—C1—N2116.30 (12)C1—C2—H2120.00
C1—C2—C3120.54 (13)C3—C2—H2120.00
N3—C3—C4122.04 (12)C9—C10—H10120.00
N3—C3—C2120.86 (13)C11—C10—H10120.00
C2—C3—C4117.10 (12)C10—C11—H11119.00
C5—C4—C6112.49 (11)C12—C11—H11119.00
C3—C4—C6130.89 (12)C11—C12—H12120.00
C3—C4—C5116.52 (11)C13—C12—H12120.00
S1—C5—C4111.67 (9)C12—C13—H13120.00
N1—C5—C4127.31 (11)C14—C13—H13120.00
S1—C5—N1120.92 (9)C9—C14—H14120.00
N4—C6—C4122.39 (12)C13—C14—H14120.00
C7—S1—C5—N1176.86 (11)C6—C4—C5—S1−0.75 (14)
C7—S1—C5—C40.24 (10)C6—C4—C5—N1−177.10 (12)
C5—S1—C7—C60.35 (11)C3—C4—C6—N44.6 (2)
C5—S1—C7—C8175.81 (12)C3—C4—C6—C7−175.08 (13)
C5—N1—C1—N2177.57 (11)C5—C4—C6—N4−179.26 (12)
C5—N1—C1—C2−1.99 (19)C5—C4—C6—C71.02 (16)
C1—N1—C5—S1−175.21 (10)N4—C6—C7—S1179.46 (11)
C1—N1—C5—C40.84 (18)N4—C6—C7—C84.1 (2)
C9—N5—C8—O12.2 (2)C4—C6—C7—S1−0.83 (15)
C9—N5—C8—C7−176.62 (13)C4—C6—C7—C8−176.18 (13)
C8—N5—C9—C10−36.6 (2)S1—C7—C8—O1167.43 (11)
C8—N5—C9—C14146.03 (14)S1—C7—C8—N5−13.78 (18)
N1—C1—C2—C32.8 (2)C6—C7—C8—O1−17.7 (2)
N2—C1—C2—C3−176.78 (13)C6—C7—C8—N5161.09 (14)
C1—C2—C3—N3177.76 (13)N5—C9—C10—C11−176.08 (14)
C1—C2—C3—C4−2.1 (2)C14—C9—C10—C111.2 (2)
N3—C3—C4—C5−178.88 (12)N5—C9—C14—C13176.12 (13)
N3—C3—C4—C6−2.9 (2)C10—C9—C14—C13−1.3 (2)
C2—C3—C4—C51.00 (18)C9—C10—C11—C12−0.3 (2)
C2—C3—C4—C6176.98 (14)C10—C11—C12—C13−0.6 (2)
C3—C4—C5—S1175.96 (9)C11—C12—C13—C140.5 (2)
C3—C4—C5—N1−0.39 (19)C12—C13—C14—C90.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N4i0.912.523.2226 (17)134
N3—H3A···N1ii0.912.072.9398 (17)161
N3—H3B···N40.912.382.9802 (17)124
N3—H3B···N2iii0.912.413.2034 (16)146
N4—H4B···O10.912.152.8387 (16)132
N4—H4B···O1iv0.912.322.9991 (16)132
N2—H2B···Cg3v0.912.563.4662 (14)173
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C9–C14 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N4i 0.912.523.2226 (17)134
N3—H3A⋯N1ii 0.912.072.9398 (17)161
N3—H3B⋯N40.912.382.9802 (17)124
N3—H3B⋯N2iii 0.912.413.2034 (16)146
N4—H4B⋯O10.912.152.8387 (16)132
N4—H4B⋯O1iv 0.912.322.9991 (16)132
N2—H2BCg3v 0.912.563.4662 (14)173

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Aryl-2-hydroxyethylamine substituted 4-oxo-4,7-dihydrothieno[2,3-b]pyridines as broad-spectrum inhibitors of human herpesvirus polymerases.

Authors:  Mark E Schnute; David J Anderson; Roger J Brideau; Fred L Ciske; Sarah A Collier; Michele M Cudahy; MariJean Eggen; Michael J Genin; Todd A Hopkins; Thomas M Judge; Euibong J Kim; Mary L Knechtel; Sajiv K Nair; James A Nieman; Nancee L Oien; Allen Scott; Steven P Tanis; Valerie A Vaillancourt; Michael W Wathen; Janet L Wieber
Journal:  Bioorg Med Chem Lett       Date:  2007-04-05       Impact factor: 2.823

3.  Synthesis and PKCtheta inhibitory activity of a series of 4-(indol-5-ylamino)thieno[2,3-b]pyridine-5-carbonitriles.

Authors:  Diane H Boschelli; Biqi Wu; Ana Carolina Barrios Sosa; Joan Chen; Magda Asselin; Derek C Cole; Julie Lee; Xiaoke Yang; Divya Chaudhary
Journal:  Bioorg Med Chem Lett       Date:  2008-04-08       Impact factor: 2.823

  3 in total

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