Literature DB >> 25161561

1-(Morpholin-4-yl)-4-(2-nitro-phen-yl)spiro-[azetidine-3,9'-xanthen]-2-one.

Zeliha Atioğlu1, Mehmet Akkurt2, Aliasghar Jarrahpour3, Roghayeh Heiran3, Namık Ozdemir4.   

Abstract

In the title compound, C22H21N3O5, the β-lactam (azetidin-2-one) ring is nearly planar [maximum deviation = 0.010 (1) Å] and makes dihedral angles of 69.22 (5), 55.32 (5) and 89.42 (4)° with the least-squares planes formed by the four C atoms of the morpholine ring, which adopts a chair conformation, the benzene ring and the xanthene ring system, respectively. In the crystal, C-H⋯O hydrogen-bond contacts connect neighbouring mol-ecules into infinite zigzag chains running parallel to the b axis.

Entities:  

Year:  2014        PMID: 25161561      PMCID: PMC4120553          DOI: 10.1107/S1600536814013464

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to β-lactams, see: Arya et al. (2014 ▶); Ebrahimi & Jarrahpour (2014 ▶); Singh & Sudheesh (2014 ▶); Zeng et al. (2014 ▶); Zarei et al. (2013 ▶); Jarrahpour & Ebrahimi (2010 ▶); Mehta et al. (2010 ▶); Singh et al. (2011 ▶). For geometric analysis, see: Cremer & Pople (1975 ▶); Nardelli (1995 ▶). For similar structures, see: Akkurt et al. (2008a ▶,b ▶); Yalçın et al. (2009 ▶); Çelik et al. (2009a ▶,b ▶, 2014 ▶).

Experimental

Crystal data

C25H21N3O5 M = 443.45 Monoclinic, a = 9.4272 (5) Å b = 18.8525 (8) Å c = 12.4345 (6) Å β = 95.443 (4)° V = 2199.97 (18) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.50 × 0.44 × 0.40 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.956, T max = 0.974 13801 measured reflections 5223 independent reflections 3421 reflections with I > 2σ(I) R int = 0.195

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.098 S = 1.00 5223 reflections 299 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.11 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814013464/sj5411sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013464/sj5411Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814013464/sj5411Isup3.cml CCDC reference: 1007508 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H21N3O5F(000) = 928
Mr = 443.45Dx = 1.339 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 14473 reflections
a = 9.4272 (5) Åθ = 1.6–28.4°
b = 18.8525 (8) ŵ = 0.10 mm1
c = 12.4345 (6) ÅT = 296 K
β = 95.443 (4)°Block, light yellow
V = 2199.97 (18) Å30.50 × 0.44 × 0.40 mm
Z = 4
Stoe IPDS 2 diffractometer5223 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3421 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.195
Detector resolution: 6.67 pixels mm-1θmax = 27.9°, θmin = 2.0°
ω scansh = −12→8
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −24→24
Tmin = 0.956, Tmax = 0.974l = −16→16
13801 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0511P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
5223 reflectionsΔρmax = 0.15 e Å3
299 parametersΔρmin = −0.11 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.56523 (11)0.77674 (4)0.39775 (8)0.0607 (3)
O20.88039 (12)0.56659 (6)0.40826 (8)0.0725 (4)
O30.59829 (13)0.48451 (5)0.40169 (9)0.0738 (4)
O40.6611 (2)0.42173 (8)0.27221 (13)0.1293 (7)
O50.05898 (13)0.80037 (7)0.43054 (10)0.0862 (5)
N10.40654 (11)0.68165 (5)0.36241 (8)0.0475 (3)
N20.26494 (11)0.70325 (5)0.37024 (8)0.0504 (3)
N30.58819 (15)0.46781 (6)0.30725 (11)0.0673 (5)
C10.53326 (14)0.71537 (6)0.38183 (9)0.0459 (4)
C20.61723 (13)0.64499 (6)0.38092 (9)0.0439 (4)
C30.46359 (13)0.60880 (6)0.36101 (9)0.0444 (4)
C40.71522 (13)0.63736 (6)0.29281 (9)0.0450 (4)
C50.68634 (14)0.66829 (7)0.19146 (10)0.0527 (4)
C60.77624 (16)0.65986 (8)0.11144 (11)0.0610 (5)
C70.89724 (16)0.61957 (8)0.13129 (12)0.0648 (5)
C80.92974 (16)0.58875 (8)0.23033 (12)0.0665 (5)
C90.83854 (14)0.59821 (7)0.31040 (10)0.0536 (4)
C100.81733 (15)0.58925 (7)0.49807 (10)0.0554 (4)
C110.88545 (17)0.56948 (9)0.59700 (12)0.0697 (6)
C120.83068 (17)0.59109 (8)0.68992 (12)0.0668 (5)
C130.71169 (18)0.63341 (7)0.68493 (11)0.0631 (5)
C140.64380 (16)0.65115 (7)0.58589 (10)0.0555 (4)
C150.69405 (14)0.62872 (6)0.48998 (10)0.0465 (4)
C160.42467 (13)0.56881 (6)0.25733 (10)0.0477 (4)
C170.48294 (15)0.50353 (6)0.23145 (10)0.0536 (4)
C180.44357 (19)0.46854 (8)0.13552 (12)0.0691 (6)
C190.34418 (19)0.49821 (9)0.06166 (12)0.0749 (6)
C200.28575 (18)0.56245 (10)0.08314 (12)0.0736 (6)
C210.32615 (15)0.59701 (8)0.17932 (11)0.0605 (5)
C220.23610 (17)0.71132 (8)0.48318 (11)0.0640 (5)
C230.08391 (19)0.73546 (10)0.48559 (15)0.0822 (7)
C240.0851 (2)0.79149 (11)0.32138 (15)0.0905 (7)
C250.23701 (19)0.77036 (8)0.31261 (12)0.0712 (6)
H30.440300.581600.424100.0530*
H50.604200.695300.177500.0630*
H60.755200.681300.044500.0730*
H70.957600.613200.077100.0780*
H81.012100.561800.243800.0800*
H110.967500.541800.600400.0840*
H120.874400.577000.756700.0800*
H130.677400.649900.748000.0760*
H140.562000.678900.582900.0670*
H180.484500.425100.121300.0830*
H190.316500.47480−0.002800.0900*
H200.218600.583000.032900.0880*
H210.285600.640800.192000.0730*
H22A0.300500.746000.518800.0770*
H22B0.250400.666500.520800.0770*
H23A0.020400.699500.452300.0990*
H23B0.063000.741000.560000.0990*
H24A0.065100.835500.282600.1090*
H24B0.022100.755300.288500.1090*
H25A0.253500.764800.237300.0850*
H25B0.300700.806900.343900.0850*
U11U22U33U12U13U23
O10.0664 (6)0.0398 (4)0.0748 (6)−0.0032 (4)0.0010 (5)−0.0022 (4)
O20.0706 (7)0.0878 (7)0.0609 (6)0.0346 (6)0.0163 (5)0.0220 (5)
O30.0973 (9)0.0551 (6)0.0684 (6)0.0094 (5)0.0043 (6)0.0026 (5)
O40.1586 (16)0.1034 (10)0.1227 (11)0.0737 (10)−0.0035 (10)−0.0381 (8)
O50.0755 (8)0.0936 (8)0.0909 (8)0.0321 (6)0.0160 (6)−0.0121 (7)
N10.0447 (6)0.0409 (5)0.0574 (6)0.0033 (4)0.0068 (4)−0.0024 (4)
N20.0436 (6)0.0549 (6)0.0531 (6)0.0091 (5)0.0072 (4)−0.0030 (5)
N30.0818 (9)0.0435 (6)0.0781 (9)0.0063 (6)0.0150 (7)−0.0064 (6)
C10.0496 (7)0.0411 (6)0.0469 (6)−0.0007 (5)0.0039 (5)0.0007 (5)
C20.0447 (7)0.0385 (6)0.0487 (6)−0.0007 (5)0.0057 (5)0.0010 (5)
C30.0455 (7)0.0391 (6)0.0496 (6)0.0004 (5)0.0093 (5)−0.0006 (5)
C40.0441 (7)0.0401 (6)0.0512 (7)−0.0027 (5)0.0061 (5)0.0021 (5)
C50.0507 (8)0.0522 (7)0.0549 (7)0.0017 (6)0.0033 (6)0.0068 (6)
C60.0670 (10)0.0655 (8)0.0514 (7)−0.0037 (7)0.0104 (7)0.0098 (6)
C70.0629 (9)0.0732 (9)0.0613 (8)0.0010 (7)0.0224 (7)0.0042 (7)
C80.0559 (9)0.0780 (9)0.0680 (9)0.0149 (7)0.0182 (7)0.0120 (7)
C90.0512 (8)0.0549 (7)0.0557 (7)0.0056 (6)0.0097 (6)0.0095 (6)
C100.0553 (8)0.0580 (7)0.0533 (7)0.0044 (6)0.0079 (6)0.0104 (6)
C110.0618 (10)0.0788 (10)0.0678 (9)0.0127 (7)0.0022 (7)0.0209 (8)
C120.0745 (11)0.0693 (9)0.0543 (8)−0.0103 (8)−0.0062 (7)0.0119 (7)
C130.0820 (11)0.0556 (8)0.0514 (8)−0.0096 (7)0.0054 (7)−0.0032 (6)
C140.0644 (9)0.0490 (7)0.0530 (7)−0.0001 (6)0.0047 (6)−0.0043 (6)
C150.0483 (7)0.0411 (6)0.0498 (7)−0.0037 (5)0.0036 (5)0.0022 (5)
C160.0472 (7)0.0465 (6)0.0511 (7)−0.0076 (5)0.0138 (5)−0.0034 (5)
C170.0606 (8)0.0454 (6)0.0569 (7)−0.0063 (6)0.0170 (6)−0.0046 (6)
C180.0864 (12)0.0576 (8)0.0669 (9)−0.0111 (8)0.0263 (8)−0.0158 (7)
C190.0825 (12)0.0869 (11)0.0567 (9)−0.0200 (9)0.0140 (8)−0.0232 (8)
C200.0652 (10)0.0960 (12)0.0588 (9)−0.0075 (8)0.0017 (7)−0.0118 (8)
C210.0547 (9)0.0666 (8)0.0597 (8)−0.0003 (6)0.0029 (6)−0.0091 (7)
C220.0656 (9)0.0724 (9)0.0555 (8)0.0085 (7)0.0137 (7)0.0006 (7)
C230.0694 (11)0.1011 (13)0.0805 (11)0.0075 (9)0.0295 (9)−0.0102 (10)
C240.0804 (13)0.1075 (14)0.0826 (11)0.0427 (10)0.0030 (9)0.0028 (10)
C250.0759 (11)0.0749 (10)0.0639 (9)0.0288 (8)0.0119 (7)0.0130 (7)
O1—C11.2072 (14)C16—C171.3977 (17)
O2—C91.3786 (16)C16—C211.3839 (19)
O2—C101.3817 (17)C17—C181.3827 (19)
O3—N31.2108 (17)C18—C191.368 (2)
O4—N31.214 (2)C19—C201.367 (3)
O5—C231.411 (2)C20—C211.383 (2)
O5—C241.412 (2)C22—C231.508 (2)
N1—N21.4078 (15)C24—C251.500 (3)
N1—C11.3546 (16)C3—H30.9800
N1—C31.4757 (15)C5—H50.9300
N2—C221.4635 (17)C6—H60.9300
N2—C251.4655 (18)C7—H70.9300
N3—C171.4659 (19)C8—H80.9300
C1—C21.5456 (17)C11—H110.9300
C2—C31.5989 (17)C12—H120.9300
C2—C41.5055 (17)C13—H130.9300
C2—C151.5071 (17)C14—H140.9300
C3—C161.5084 (17)C18—H180.9300
C4—C51.3919 (17)C19—H190.9300
C4—C91.3769 (18)C20—H200.9300
C5—C61.3761 (19)C21—H210.9300
C6—C71.373 (2)C22—H22A0.9700
C7—C81.370 (2)C22—H22B0.9700
C8—C91.387 (2)C23—H23A0.9700
C10—C111.384 (2)C23—H23B0.9700
C10—C151.3756 (19)C24—H24A0.9700
C11—C121.371 (2)C24—H24B0.9700
C12—C131.373 (2)C25—H25A0.9700
C13—C141.3743 (19)C25—H25B0.9700
C14—C151.3902 (18)
C9—O2—C10118.08 (11)C16—C21—C20122.45 (14)
C23—O5—C24109.10 (14)N2—C22—C23108.31 (12)
N2—N1—C1132.68 (10)O5—C23—C22111.54 (14)
N2—N1—C3128.25 (9)O5—C24—C25110.85 (14)
C1—N1—C397.05 (9)N2—C25—C24108.79 (14)
N1—N2—C22111.11 (10)N1—C3—H3112.00
N1—N2—C25110.09 (10)C2—C3—H3112.00
C22—N2—C25109.78 (10)C16—C3—H3112.00
O3—N3—O4122.62 (15)C4—C5—H5119.00
O3—N3—C17119.36 (12)C6—C5—H5119.00
O4—N3—C17118.02 (14)C5—C6—H6120.00
O1—C1—N1132.94 (12)C7—C6—H6120.00
O1—C1—C2134.74 (12)C6—C7—H7120.00
N1—C1—C292.26 (9)C8—C7—H7120.00
C1—C2—C384.86 (9)C7—C8—H8120.00
C1—C2—C4115.94 (9)C9—C8—H8120.00
C1—C2—C15111.77 (9)C10—C11—H11120.00
C3—C2—C4117.12 (9)C12—C11—H11120.00
C3—C2—C15113.79 (9)C11—C12—H12120.00
C4—C2—C15111.09 (10)C13—C12—H12120.00
N1—C3—C285.81 (8)C12—C13—H13120.00
N1—C3—C16114.57 (9)C14—C13—H13120.00
C2—C3—C16119.27 (10)C13—C14—H14119.00
C2—C4—C5122.55 (11)C15—C14—H14119.00
C2—C4—C9120.18 (10)C17—C18—H18120.00
C5—C4—C9117.26 (11)C19—C18—H18120.00
C4—C5—C6121.69 (12)C18—C19—H19120.00
C5—C6—C7119.47 (13)C20—C19—H19120.00
C6—C7—C8120.49 (14)C19—C20—H20120.00
C7—C8—C9119.32 (14)C21—C20—H20120.00
O2—C9—C4122.59 (11)C16—C21—H21119.00
O2—C9—C8115.65 (12)C20—C21—H21119.00
C4—C9—C8121.76 (12)N2—C22—H22A110.00
O2—C10—C11115.87 (13)N2—C22—H22B110.00
O2—C10—C15122.24 (11)C23—C22—H22A110.00
C11—C10—C15121.89 (13)C23—C22—H22B110.00
C10—C11—C12119.27 (15)H22A—C22—H22B108.00
C11—C12—C13120.38 (14)O5—C23—H23A109.00
C12—C13—C14119.40 (13)O5—C23—H23B109.00
C13—C14—C15121.81 (13)C22—C23—H23A109.00
C2—C15—C10120.43 (11)C22—C23—H23B109.00
C2—C15—C14122.43 (12)H23A—C23—H23B108.00
C10—C15—C14117.13 (12)O5—C24—H24A109.00
C3—C16—C17124.60 (11)O5—C24—H24B109.00
C3—C16—C21119.98 (11)C25—C24—H24A109.00
C17—C16—C21115.42 (12)C25—C24—H24B109.00
N3—C17—C16120.88 (11)H24A—C24—H24B108.00
N3—C17—C18116.45 (12)N2—C25—H25A110.00
C16—C17—C18122.65 (13)N2—C25—H25B110.00
C17—C18—C19119.66 (14)C24—C25—H25A110.00
C18—C19—C20119.61 (14)C24—C25—H25B110.00
C19—C20—C21120.21 (15)H25A—C25—H25B108.00
C9—O2—C10—C11−164.66 (13)C15—C2—C3—C16−131.34 (11)
C9—O2—C10—C1515.67 (19)C15—C2—C4—C5−160.75 (11)
C10—O2—C9—C4−16.61 (19)C1—C2—C4—C9148.72 (11)
C10—O2—C9—C8162.73 (13)C15—C2—C4—C919.71 (15)
C23—O5—C24—C25−61.03 (18)C15—C2—C3—N1112.75 (10)
C24—O5—C23—C2260.87 (18)C2—C3—C16—C1770.79 (16)
N2—N1—C1—O1−11.8 (2)C2—C3—C16—C21−108.37 (14)
C3—N1—N2—C25−149.25 (11)N1—C3—C16—C21−8.93 (17)
C1—N1—N2—C22−71.02 (15)N1—C3—C16—C17170.23 (11)
C3—N1—N2—C2288.92 (13)C5—C4—C9—C8−1.01 (19)
N2—N1—C3—C2−166.66 (11)C2—C4—C5—C6−179.05 (12)
C1—N1—C3—C2−1.38 (9)C2—C4—C9—C8178.56 (12)
N2—N1—C3—C1672.97 (14)C5—C4—C9—O2178.30 (12)
C3—N1—C1—O1−176.04 (14)C2—C4—C9—O2−2.14 (19)
N2—N1—C1—C2165.68 (11)C9—C4—C5—C60.51 (19)
C1—N1—N2—C2550.80 (16)C4—C5—C6—C70.5 (2)
C3—N1—C1—C21.42 (9)C5—C6—C7—C8−0.9 (2)
C1—N1—C3—C16−121.74 (11)C6—C7—C8—C90.5 (2)
C22—N2—C25—C24−58.02 (15)C7—C8—C9—C40.6 (2)
N1—N2—C22—C23179.19 (11)C7—C8—C9—O2−178.80 (13)
C25—N2—C22—C2357.18 (16)C11—C10—C15—C143.1 (2)
N1—N2—C25—C24179.37 (12)O2—C10—C11—C12178.81 (14)
O3—N3—C17—C18−159.81 (14)O2—C10—C15—C14−177.26 (12)
O4—N3—C17—C16−161.84 (14)C11—C10—C15—C2−175.75 (13)
O3—N3—C17—C1618.9 (2)O2—C10—C15—C23.91 (19)
O4—N3—C17—C1819.4 (2)C15—C10—C11—C12−1.5 (2)
N1—C1—C2—C4116.42 (11)C10—C11—C12—C13−1.7 (2)
N1—C1—C2—C15−114.90 (10)C11—C12—C13—C143.1 (2)
O1—C1—C2—C3176.08 (14)C12—C13—C14—C15−1.5 (2)
N1—C1—C2—C3−1.31 (8)C13—C14—C15—C2177.22 (12)
O1—C1—C2—C4−66.19 (18)C13—C14—C15—C10−1.6 (2)
O1—C1—C2—C1562.49 (18)C3—C16—C17—C18179.68 (13)
C1—C2—C3—N11.20 (8)C17—C16—C21—C201.2 (2)
C4—C2—C3—N1−115.37 (10)C21—C16—C17—N3−179.79 (12)
C1—C2—C3—C16117.11 (10)C3—C16—C17—N31.0 (2)
C4—C2—C3—C160.54 (15)C21—C16—C17—C18−1.1 (2)
C1—C2—C4—C5−31.73 (16)C3—C16—C21—C20−179.54 (13)
C4—C2—C15—C10−20.60 (16)N3—C17—C18—C19178.99 (14)
C4—C2—C15—C14160.64 (11)C16—C17—C18—C190.3 (2)
C3—C2—C4—C9−113.39 (13)C17—C18—C19—C200.6 (3)
C3—C2—C4—C566.16 (15)C18—C19—C20—C21−0.5 (3)
C1—C2—C15—C10−151.80 (12)C19—C20—C21—C16−0.5 (2)
C1—C2—C15—C1429.43 (16)N2—C22—C23—O5−59.13 (17)
C3—C2—C15—C10114.15 (13)O5—C24—C25—N259.98 (18)
C3—C2—C15—C14−64.62 (15)
D—H···AD—HH···AD···AD—H···A
C3—H3···O3i0.982.553.5310 (16)174
C6—H6···O1ii0.932.563.3828 (17)148
C11—H11···O2iii0.932.503.389 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O3i 0.982.553.5310 (16)174
C6—H6⋯O1ii 0.932.563.3828 (17)148
C11—H11⋯O2iii 0.932.503.389 (2)159

Symmetry codes: (i) ; (ii) ; (iii) .

  10 in total

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