Literature DB >> 24765052

1-[3-(Morpholin-4-yl)prop-yl]-4-(3-nitro-phen-yl)spiro-[azetidine-3,9'-xanthen]-2-one.

Ismail Celik1, Mehmet Akkurt2, Aliasghar Jarrahpour3, Roghayeh Heiran3, Namık Ozdemir4.   

Abstract

The β-lactam (azetidin-2-one) ring of the title compound, C28H27N3O5, is nearly planar [maximum deviation = 0.010 (1) Å] and makes dihedral angles of 75.77 (5), 52.78 (9) and 88.72 (5)°, respectively, with the benzene ring, the least-squares plane formed by the four C atoms of the morpholine ring, which adopts a chair conformation, and the xanthene ring system. In the crystal, C-H⋯O hydrogen-bond contacts connect neighbouring mol-ecules into infinite zigzag chains running parallel to the b axis.

Entities:  

Year:  2014        PMID: 24765052      PMCID: PMC3998443          DOI: 10.1107/S160053681400419X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to β-lactams, see: Arumugam et al. (2011 ▶); Jarrahpour et al. (2010 ▶); Chrysselis et al. (2000 ▶); Mehta et al. (2010 ▶); Singh (2003 ▶); Singh et al. (2011 ▶, 2014 ▶). For similar structures, see: Akkurt et al. (2008a ▶,b ▶); Yalçın et al. (2009 ▶); Çelik et al. (2009a ▶,b ▶). For geometric analysis, see: Cremer & Pople (1975 ▶); Nardelli (1995 ▶).

Experimental

Crystal data

C28H27N3O5 M = 485.53 Monoclinic, a = 9.2637 (6) Å b = 11.4091 (5) Å c = 23.3310 (15) Å β = 96.930 (5)° V = 2447.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.55 × 0.38 × 0.22 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.957, T max = 0.983 19036 measured reflections 5393 independent reflections 3044 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.093 S = 0.88 5393 reflections 325 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681400419X/sj5392sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681400419X/sj5392Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681400419X/sj5392Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C28H27N3O5F(000) = 1024
Mr = 485.53Dx = 1.317 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 16797 reflections
a = 9.2637 (6) Åθ = 1.8–27.6°
b = 11.4091 (5) ŵ = 0.09 mm1
c = 23.3310 (15) ÅT = 296 K
β = 96.930 (5)°Block, light yellow
V = 2447.9 (2) Å30.55 × 0.38 × 0.22 mm
Z = 4
Stoe IPDS 2 diffractometer5393 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3044 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.041
Detector resolution: 6.67 pixels mm-1θmax = 27.2°, θmin = 1.8°
ω scansh = −11→11
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −14→14
Tmin = 0.957, Tmax = 0.983l = −29→29
19036 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.0457P)2] where P = (Fo2 + 2Fc2)/3
S = 0.88(Δ/σ)max < 0.001
5393 reflectionsΔρmax = 0.15 e Å3
325 parametersΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.84675 (13)0.41791 (9)0.23520 (5)0.0578 (4)
O20.49859 (13)0.68567 (11)0.32597 (5)0.0642 (5)
O30.21884 (16)0.55524 (13)0.00379 (6)0.0903 (6)
O40.39138 (19)0.44168 (14)0.03770 (8)0.1073 (7)
O50.76395 (16)0.93149 (14)−0.03119 (7)0.0914 (6)
N10.80288 (13)0.58505 (10)0.17769 (5)0.0425 (4)
N20.33075 (18)0.53649 (15)0.03527 (6)0.0641 (6)
N30.86873 (15)0.81179 (12)0.07346 (6)0.0539 (5)
C10.78855 (17)0.51133 (13)0.22163 (6)0.0424 (5)
C20.67968 (16)0.59013 (12)0.24776 (6)0.0406 (5)
C30.69833 (16)0.67310 (12)0.19331 (6)0.0405 (4)
C40.74121 (18)0.64401 (13)0.30441 (6)0.0447 (5)
C50.88946 (19)0.65055 (15)0.32229 (7)0.0566 (6)
C60.9422 (2)0.70557 (18)0.37322 (8)0.0727 (7)
C70.8472 (3)0.75553 (18)0.40659 (8)0.0746 (8)
C80.6998 (2)0.74905 (16)0.39060 (7)0.0667 (7)
C90.64771 (19)0.69209 (14)0.33962 (7)0.0512 (5)
C100.44594 (19)0.59521 (15)0.28968 (7)0.0533 (6)
C110.3044 (2)0.55984 (18)0.29314 (9)0.0704 (8)
C120.2471 (2)0.4687 (2)0.25963 (10)0.0783 (8)
C130.3315 (2)0.41067 (18)0.22397 (9)0.0729 (8)
C140.4725 (2)0.44662 (15)0.22061 (7)0.0588 (6)
C150.53121 (18)0.54190 (14)0.25249 (6)0.0465 (5)
C160.57100 (16)0.69479 (13)0.14871 (6)0.0405 (4)
C170.50680 (17)0.80495 (14)0.14408 (6)0.0484 (5)
C180.39007 (18)0.82805 (15)0.10310 (7)0.0557 (6)
C190.33281 (18)0.74088 (16)0.06655 (7)0.0535 (6)
C200.39514 (17)0.63143 (14)0.07194 (6)0.0462 (5)
C210.51418 (17)0.60747 (13)0.11139 (6)0.0454 (5)
C220.89002 (19)0.57752 (15)0.13018 (7)0.0534 (6)
C231.0149 (2)0.66323 (17)0.13299 (8)0.0672 (7)
C240.9716 (2)0.79100 (17)0.12441 (8)0.0637 (7)
C250.8098 (3)0.93061 (16)0.07274 (10)0.0799 (8)
C260.7015 (3)0.9490 (2)0.02030 (12)0.0950 (10)
C270.8214 (2)0.8171 (2)−0.03121 (9)0.0820 (8)
C280.9321 (2)0.79517 (17)0.02015 (7)0.0643 (7)
H30.747300.746600.205600.0490*
H50.954400.617300.299500.0680*
H61.041700.708700.384800.0870*
H70.882800.794300.440400.0900*
H80.635600.782400.413600.0800*
H110.248600.597700.318100.0850*
H120.151200.446000.260900.0940*
H130.293400.347200.202100.0870*
H140.529000.406600.196700.0710*
H170.543200.864300.169100.0580*
H180.350000.902900.100200.0670*
H190.253900.755500.038900.0640*
H210.556100.533300.113000.0550*
H22A0.827100.590300.094400.0640*
H22B0.928700.498700.129000.0640*
H23A1.076200.641800.103700.0810*
H23B1.072900.655300.170300.0810*
H24A0.929100.817800.158100.0760*
H24B1.058300.837200.121600.0760*
H25A0.888400.986800.072700.0960*
H25B0.763200.943500.107300.0960*
H26A0.621000.895100.021400.1140*
H26B0.663301.028100.020800.1140*
H27A0.866200.80520−0.066300.0980*
H27B0.742800.76090−0.031100.0980*
H28A0.968700.715700.018600.0770*
H28B1.013300.848500.019200.0770*
U11U22U33U12U13U23
O10.0719 (8)0.0442 (6)0.0557 (6)0.0105 (6)0.0012 (6)0.0086 (5)
O20.0646 (8)0.0644 (8)0.0658 (8)−0.0010 (7)0.0172 (6)−0.0135 (6)
O30.0830 (10)0.1006 (11)0.0769 (9)−0.0037 (8)−0.0333 (8)−0.0132 (8)
O40.1157 (13)0.0641 (10)0.1279 (13)0.0029 (9)−0.0430 (11)−0.0246 (9)
O50.0794 (10)0.0904 (11)0.1034 (12)0.0183 (9)0.0075 (9)0.0388 (9)
N10.0466 (7)0.0417 (7)0.0391 (6)0.0052 (6)0.0044 (6)0.0046 (6)
N20.0675 (10)0.0654 (10)0.0551 (9)−0.0072 (8)−0.0104 (8)−0.0034 (8)
N30.0539 (8)0.0478 (8)0.0602 (8)0.0011 (7)0.0082 (7)0.0008 (7)
C10.0474 (9)0.0388 (8)0.0382 (8)−0.0011 (7)−0.0061 (7)0.0026 (7)
C20.0480 (9)0.0383 (8)0.0347 (7)−0.0009 (7)0.0023 (6)0.0033 (6)
C30.0447 (8)0.0374 (8)0.0386 (7)−0.0003 (7)0.0022 (6)0.0009 (6)
C40.0565 (10)0.0429 (8)0.0339 (7)−0.0037 (8)0.0020 (7)0.0043 (6)
C50.0568 (11)0.0641 (11)0.0469 (9)−0.0088 (9)−0.0017 (8)0.0006 (8)
C60.0737 (13)0.0866 (14)0.0534 (10)−0.0198 (12)−0.0102 (10)−0.0017 (10)
C70.0998 (17)0.0782 (14)0.0435 (10)−0.0289 (12)−0.0012 (11)−0.0078 (9)
C80.0974 (16)0.0619 (11)0.0433 (9)−0.0142 (11)0.0190 (10)−0.0082 (8)
C90.0609 (11)0.0491 (9)0.0438 (8)−0.0065 (8)0.0076 (8)0.0029 (8)
C100.0532 (10)0.0551 (10)0.0514 (9)−0.0036 (9)0.0054 (8)0.0052 (8)
C110.0551 (12)0.0800 (14)0.0777 (13)−0.0019 (10)0.0146 (10)0.0084 (11)
C120.0570 (12)0.0886 (15)0.0886 (15)−0.0207 (12)0.0055 (11)0.0157 (13)
C130.0721 (14)0.0705 (13)0.0738 (13)−0.0266 (11)0.0000 (11)0.0004 (11)
C140.0647 (12)0.0560 (10)0.0551 (10)−0.0142 (9)0.0045 (9)−0.0001 (8)
C150.0517 (10)0.0458 (9)0.0407 (8)−0.0045 (8)0.0009 (7)0.0075 (7)
C160.0445 (8)0.0419 (8)0.0353 (7)0.0014 (7)0.0053 (6)0.0033 (7)
C170.0565 (10)0.0451 (9)0.0433 (8)0.0069 (8)0.0045 (8)−0.0021 (7)
C180.0584 (11)0.0520 (10)0.0556 (10)0.0184 (8)0.0020 (8)0.0012 (8)
C190.0456 (9)0.0694 (11)0.0444 (9)0.0093 (9)0.0005 (8)0.0059 (8)
C200.0476 (9)0.0521 (9)0.0385 (8)−0.0022 (8)0.0031 (7)0.0006 (7)
C210.0517 (9)0.0416 (9)0.0420 (8)0.0032 (7)0.0015 (7)0.0038 (7)
C220.0622 (11)0.0526 (10)0.0472 (9)0.0087 (9)0.0145 (8)0.0023 (8)
C230.0517 (10)0.0897 (15)0.0603 (11)0.0010 (10)0.0072 (9)0.0204 (10)
C240.0626 (12)0.0716 (12)0.0571 (10)−0.0203 (10)0.0085 (9)0.0010 (9)
C250.0907 (15)0.0502 (11)0.1043 (16)0.0055 (11)0.0337 (14)−0.0014 (11)
C260.0768 (15)0.0736 (15)0.136 (2)0.0262 (12)0.0188 (16)0.0281 (15)
C270.0839 (15)0.0882 (16)0.0705 (13)0.0121 (12)−0.0048 (11)0.0079 (12)
C280.0641 (12)0.0697 (12)0.0586 (10)0.0146 (10)0.0059 (9)0.0062 (9)
O1—C11.2189 (18)C18—C191.374 (2)
O2—C91.382 (2)C19—C201.375 (2)
O2—C101.386 (2)C20—C211.376 (2)
O3—N21.215 (2)C22—C231.510 (3)
O4—N21.217 (2)C23—C241.519 (3)
O5—C261.409 (3)C25—C261.500 (4)
O5—C271.410 (3)C27—C281.501 (3)
N1—C11.3449 (18)C3—H30.9800
N1—C31.4715 (19)C5—H50.9300
N1—C221.450 (2)C6—H60.9300
N2—C201.462 (2)C7—H70.9300
N3—C241.451 (2)C8—H80.9300
N3—C251.461 (2)C11—H110.9300
N3—C281.450 (2)C12—H120.9300
C1—C21.532 (2)C13—H130.9300
C2—C31.610 (2)C14—H140.9300
C2—C41.506 (2)C17—H170.9300
C2—C151.498 (2)C18—H180.9300
C3—C161.496 (2)C19—H190.9300
C4—C51.388 (2)C21—H210.9300
C4—C91.378 (2)C22—H22A0.9700
C5—C61.380 (3)C22—H22B0.9700
C6—C71.368 (3)C23—H23A0.9700
C7—C81.373 (3)C23—H23B0.9700
C8—C91.390 (2)C24—H24A0.9700
C10—C111.384 (3)C24—H24B0.9700
C10—C151.383 (2)C25—H25A0.9700
C11—C121.369 (3)C25—H25B0.9700
C12—C131.378 (3)C26—H26A0.9700
C13—C141.380 (3)C26—H26B0.9700
C14—C151.390 (2)C27—H27A0.9700
C16—C171.389 (2)C27—H27B0.9700
C16—C211.385 (2)C28—H28A0.9700
C17—C181.380 (2)C28—H28B0.9700
C9—O2—C10116.66 (13)C2—C3—H3111.00
C26—O5—C27108.99 (17)C16—C3—H3111.00
C1—N1—C396.30 (11)C4—C5—H5119.00
C1—N1—C22131.36 (13)C6—C5—H5119.00
C3—N1—C22132.33 (12)C5—C6—H6120.00
O3—N2—O4122.68 (17)C7—C6—H6120.00
O3—N2—C20118.78 (16)C6—C7—H7120.00
O4—N2—C20118.54 (16)C8—C7—H7120.00
C24—N3—C25111.64 (15)C7—C8—H8120.00
C24—N3—C28112.80 (14)C9—C8—H8120.00
C25—N3—C28107.51 (15)C10—C11—H11120.00
O1—C1—N1131.57 (14)C12—C11—H11120.00
O1—C1—C2134.57 (14)C11—C12—H12120.00
N1—C1—C293.82 (11)C13—C12—H12120.00
C1—C2—C383.83 (10)C12—C13—H13120.00
C1—C2—C4113.04 (12)C14—C13—H13120.00
C1—C2—C15117.93 (12)C13—C14—H14120.00
C3—C2—C4112.78 (11)C15—C14—H14120.00
C3—C2—C15117.45 (12)C16—C17—H17119.00
C4—C2—C15109.82 (12)C18—C17—H17119.00
N1—C3—C286.02 (10)C17—C18—H18120.00
N1—C3—C16115.33 (12)C19—C18—H18120.00
C2—C3—C16119.69 (12)C18—C19—H19121.00
C2—C4—C5122.79 (14)C20—C19—H19121.00
C2—C4—C9119.16 (15)C16—C21—H21120.00
C5—C4—C9118.02 (14)C20—C21—H21120.00
C4—C5—C6121.18 (16)N1—C22—H22A108.00
C5—C6—C7119.63 (18)N1—C22—H22B109.00
C6—C7—C8120.65 (18)C23—C22—H22A109.00
C7—C8—C9119.26 (17)C23—C22—H22B109.00
O2—C9—C4121.64 (14)H22A—C22—H22B108.00
O2—C9—C8117.15 (15)C22—C23—H23A108.00
C4—C9—C8121.21 (16)C22—C23—H23B108.00
O2—C10—C11116.60 (16)C24—C23—H23A108.00
O2—C10—C15121.69 (15)C24—C23—H23B108.00
C11—C10—C15121.70 (16)H23A—C23—H23B107.00
C10—C11—C12119.55 (18)N3—C24—H24A109.00
C11—C12—C13120.04 (18)N3—C24—H24B109.00
C12—C13—C14120.09 (18)C23—C24—H24A109.00
C13—C14—C15120.91 (17)C23—C24—H24B109.00
C2—C15—C10118.93 (14)H24A—C24—H24B108.00
C2—C15—C14123.45 (14)N3—C25—H25A109.00
C10—C15—C14117.61 (16)N3—C25—H25B110.00
C3—C16—C17119.86 (13)C26—C25—H25A110.00
C3—C16—C21121.75 (13)C26—C25—H25B110.00
C17—C16—C21118.39 (13)H25A—C25—H25B108.00
C16—C17—C18121.28 (14)O5—C26—H26A109.00
C17—C18—C19120.22 (16)O5—C26—H26B109.00
C18—C19—C20118.30 (15)C25—C26—H26A109.00
N2—C20—C19118.82 (14)C25—C26—H26B109.00
N2—C20—C21118.80 (14)H26A—C26—H26B108.00
C19—C20—C21122.37 (14)O5—C27—H27A109.00
C16—C21—C20119.40 (14)O5—C27—H27B109.00
N1—C22—C23115.00 (14)C28—C27—H27A109.00
C22—C23—C24115.28 (15)C28—C27—H27B109.00
N3—C24—C23113.70 (15)H27A—C27—H27B108.00
N3—C25—C26110.57 (17)N3—C28—H28A109.00
O5—C26—C25111.9 (2)N3—C28—H28B109.00
O5—C27—C28112.07 (17)C27—C28—H28A110.00
N3—C28—C27110.76 (15)C27—C28—H28B110.00
N1—C3—H3111.00H28A—C28—H28B108.00
C9—O2—C10—C11155.89 (16)C1—C2—C15—C14−19.2 (2)
C10—O2—C9—C423.8 (2)C15—C2—C3—N1−119.59 (13)
C10—O2—C9—C8−156.04 (15)C1—C2—C15—C10161.87 (14)
C9—O2—C10—C15−23.2 (2)C3—C2—C15—C1478.76 (19)
C27—O5—C26—C2557.9 (2)C1—C2—C4—C9−163.90 (14)
C26—O5—C27—C28−57.7 (2)C2—C3—C16—C17110.27 (15)
C1—N1—C22—C23−110.50 (18)C2—C3—C16—C21−69.70 (18)
C3—N1—C1—O1−179.56 (17)N1—C3—C16—C2130.8 (2)
C22—N1—C1—C2179.91 (15)N1—C3—C16—C17−149.28 (13)
C22—N1—C1—O11.9 (3)C5—C4—C9—O2−177.71 (14)
C3—N1—C1—C2−1.50 (12)C9—C4—C5—C6−1.3 (2)
C3—N1—C22—C2371.4 (2)C2—C4—C5—C6176.86 (16)
C1—N1—C3—C16−119.66 (13)C2—C4—C9—O24.1 (2)
C22—N1—C3—C2180.00 (15)C5—C4—C9—C82.2 (2)
C22—N1—C3—C1658.9 (2)C2—C4—C9—C8−176.06 (15)
C1—N1—C3—C21.43 (11)C4—C5—C6—C7−0.6 (3)
O3—N2—C20—C21174.10 (15)C5—C6—C7—C81.6 (3)
O4—N2—C20—C19175.60 (17)C6—C7—C8—C9−0.7 (3)
O4—N2—C20—C21−5.7 (2)C7—C8—C9—O2178.67 (16)
O3—N2—C20—C19−4.6 (2)C7—C8—C9—C4−1.2 (3)
C24—N3—C25—C26−178.81 (18)C11—C10—C15—C14−3.4 (2)
C28—N3—C24—C23−69.47 (19)O2—C10—C15—C2−5.3 (2)
C25—N3—C24—C23169.34 (17)C11—C10—C15—C2175.60 (16)
C28—N3—C25—C2657.0 (2)C15—C10—C11—C120.9 (3)
C25—N3—C28—C27−56.8 (2)O2—C10—C11—C12−178.17 (18)
C24—N3—C28—C27179.73 (16)O2—C10—C15—C14175.66 (15)
O1—C1—C2—C15−62.8 (2)C10—C11—C12—C131.8 (3)
O1—C1—C2—C3179.33 (19)C11—C12—C13—C14−2.0 (3)
O1—C1—C2—C467.2 (2)C12—C13—C14—C15−0.6 (3)
N1—C1—C2—C15119.25 (13)C13—C14—C15—C103.2 (2)
N1—C1—C2—C4−110.79 (13)C13—C14—C15—C2−175.76 (16)
N1—C1—C2—C31.37 (11)C21—C16—C17—C18−0.6 (2)
C1—C2—C4—C518.0 (2)C3—C16—C17—C18179.44 (14)
C15—C2—C3—C16−2.59 (19)C3—C16—C21—C20178.70 (14)
C4—C2—C15—C14−150.62 (15)C17—C16—C21—C20−1.3 (2)
C15—C2—C4—C9−29.94 (19)C16—C17—C18—C191.4 (2)
C3—C2—C4—C9103.12 (16)C17—C18—C19—C20−0.2 (2)
C15—C2—C4—C5151.94 (15)C18—C19—C20—C21−1.7 (2)
C4—C2—C3—C16−131.83 (14)C18—C19—C20—N2176.99 (15)
C3—C2—C15—C10−100.18 (16)C19—C20—C21—C162.5 (2)
C4—C2—C3—N1111.17 (13)N2—C20—C21—C16−176.22 (14)
C1—C2—C3—C16115.75 (13)N1—C22—C23—C24−68.6 (2)
C1—C2—C3—N1−1.25 (10)C22—C23—C24—N3−50.6 (2)
C4—C2—C15—C1030.44 (19)N3—C25—C26—O5−59.3 (2)
C3—C2—C4—C5−75.00 (18)O5—C27—C28—N359.0 (2)
D—H···AD—HH···AD···AD—H···A
C17—H17···O1i0.932.423.2423 (19)148
C22—H22A···N30.972.612.978 (2)103
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C17—H17⋯O1i 0.932.423.2423 (19)148

Symmetry code: (i) .

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