Literature DB >> 25160630

The discovery of error-prone DNA polymerase V and its unique regulation by RecA and ATP.

Myron F Goodman1.   

Abstract

My career pathway has taken a circuitous route, beginning with a Ph.D. degree in electrical engineering from The Johns Hopkins University, followed by five postdoctoral years in biology at Hopkins and culminating in a faculty position in biological sciences at the University of Southern California. My startup package in 1973 consisted of $2,500, not to be spent all at once, plus an ancient Packard scintillation counter that had a series of rapidly flashing light bulbs to indicate a radioactive readout in counts/minute. My research pathway has been similarly circuitous. The discovery of Escherichia coli DNA polymerase V (pol V) began with an attempt to identify the mutagenic DNA polymerase responsible for copying damaged DNA as part of the well known SOS regulon. Although we succeeded in identifying a DNA polymerase, one that was induced as part of the SOS response, we actually rediscovered DNA polymerase II, albeit in a new role. A decade later, we discovered a new polymerase, pol V, whose activity turned out to be regulated by bound molecules of RecA protein and ATP. This Reflections article describes our research trajectory, includes a review of key features of DNA damage-induced SOS mutagenesis leading us to pol V, and reflects on some of the principal researchers who have made indispensable contributions to our efforts.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ATP; DNA Damage; DNA Polymerase; DNA Synthesis; Mutagenesis; RecA Nucleoprotein Filament; SOS Mutagenesis; Translesion DNA Synthesis

Mesh:

Substances:

Year:  2014        PMID: 25160630      PMCID: PMC4175320          DOI: 10.1074/jbc.X114.607374

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

Review 1.  A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V.

Authors:  Meghna Patel; Qingfei Jiang; Roger Woodgate; Michael M Cox; Myron F Goodman
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

Review 2.  Mutation induced by DNA damage: a many protein affair.

Authors:  H Echols; M F Goodman
Journal:  Mutat Res       Date:  1990 Sep-Nov       Impact factor: 2.433

3.  Deoxyribonucleic acid plymerase II. of Escherichia coli. I. The purification and characterization of the enzyme.

Authors:  R B Wickner; B Ginsberg; I Berkower; J Hurwitz
Journal:  J Biol Chem       Date:  1972-01-25       Impact factor: 5.157

4.  The radiation sensitivity of Escherichia coli B: a hypothesis relating filament formation and prophage induction.

Authors:  E M Witkin
Journal:  Proc Natl Acad Sci U S A       Date:  1967-05       Impact factor: 11.205

5.  The two-step model of bacterial UV mutagenesis.

Authors:  B A Bridges; R Woodgate
Journal:  Mutat Res       Date:  1985 Jun-Jul       Impact factor: 2.433

6.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

7.  RecA protein-dependent cleavage of UmuD protein and SOS mutagenesis.

Authors:  H Shinagawa; H Iwasaki; T Kato; A Nakata
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

8.  A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme.

Authors:  R H Scheuermann; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1984-12       Impact factor: 11.205

Review 9.  The bacterial RecA protein as a motor protein.

Authors:  Michael M Cox
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

10.  DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase.

Authors:  Aysen L Erdem; Malgorzata Jaszczur; Jeffrey G Bertram; Roger Woodgate; Michael M Cox; Myron F Goodman
Journal:  Elife       Date:  2014-04-24       Impact factor: 8.140

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  5 in total

1.  Suppression of the E. coli SOS response by dNTP pool changes.

Authors:  Katarzyna H Maslowska; Karolina Makiela-Dzbenska; Iwona J Fijalkowska; Roel M Schaaper
Journal:  Nucleic Acids Res       Date:  2015-03-30       Impact factor: 16.971

2.  Blocking the RecA activity and SOS-response in bacteria with a short α-helical peptide.

Authors:  Alexander Yakimov; Georgii Pobegalov; Irina Bakhlanova; Mikhail Khodorkovskii; Michael Petukhov; Dmitry Baitin
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

3.  MAW point mutation impairs H. Seropedicae RecA ATP hydrolysis and DNA repair without inducing large conformational changes in its structure.

Authors:  Wellington C Leite; Renato F Penteado; Fernando Gomes; Jorge Iulek; Rafael M Etto; Sérgio C Saab; Maria B R Steffens; Carolina W Galvão
Journal:  PLoS One       Date:  2019-04-18       Impact factor: 3.240

4.  The rarA gene as part of an expanded RecFOR recombination pathway: Negative epistasis and synthetic lethality with ruvB, recG, and recQ.

Authors:  Kanika Jain; Elizabeth A Wood; Michael M Cox
Journal:  PLoS Genet       Date:  2021-12-22       Impact factor: 5.917

5.  The Escherichia coli serS gene promoter region overlaps with the rarA gene.

Authors:  Kanika Jain; Tyler H Stanage; Elizabeth A Wood; Michael M Cox
Journal:  PLoS One       Date:  2022-04-15       Impact factor: 3.752

  5 in total

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